View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_10 (Length: 569)
Name: NF11975_low_10
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 1701980 - 1701430
Alignment:
| Q |
1 |
tgaaaatttggaaatatagtaacaacatcagttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1701980 |
tgaaaatttggaaatatagtaacaacatcagttttactttttaacggataaatccaagaatatcgagtaaaatgatcaacaaacacaagataatatttgt |
1701881 |
T |
|
| Q |
101 |
aaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagctt |
200 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
1701880 |
aaccatgaactgaagtgataggagagggtccccaaacatcagaaaataacagttcaagaggagctgtggttttgatagaagaaacagaaaaaggaagctt |
1701781 |
T |
|
| Q |
201 |
atgacttttattaatatgacaagaattacaatgaannnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaa |
300 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| |
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| T |
1701780 |
atgacttttattaatatggcaagaattacaatgaaattttttattttctaaattcctaaaattgccacaagtagacatcatttgtgcaagaactctgaaa |
1701681 |
T |
|
| Q |
301 |
gagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtaga |
400 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
1701680 |
gagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgatattgagacttaggatgaaaggtgtaga |
1701581 |
T |
|
| Q |
401 |
gatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaagatatgtattgttagactt |
500 |
Q |
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| T |
1701580 |
gatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtgaaattcaagatatgtattgttagactt |
1701481 |
T |
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| Q |
501 |
gcagaatttcttaacagatatgagattatgtttagcatttgggacacaaag |
551 |
Q |
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| T |
1701480 |
gcagaatttcttaacatatatgagattatgtttagcatttgggacacaaag |
1701430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 120 - 551
Target Start/End: Complemental strand, 181434 - 181003
Alignment:
| Q |
120 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
219 |
Q |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
|
| Q |
220 |
caagaattacaatgaannnnnnnattttctaagttcctaaaactgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
319 |
Q |
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| T |
181334 |
caagaattacaatgaaattttttattttctaagttcctaaaattgccacaactagacatcattagtgcaagaactctgaaagagggatgcccgaaacgag |
181235 |
T |
|
| Q |
320 |
catgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgatattgagacatataatgaaaggtgtagagatcactgttacttgaacc |
419 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
181234 |
catgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgatattgagacatataatgaaaggtgtagagatcactgttactggaacc |
181135 |
T |
|
| Q |
420 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgaaattcaagatatgtattgttagacttgcagaatttcttaacagat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
181134 |
gcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtgcaattcaagatatgtattgttagacttgcagaatttcttaacatat |
181035 |
T |
|
| Q |
520 |
atgagattatgtttagcatttgggacacaaag |
551 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
181034 |
atgagattatgtttagcatttgggacacaaag |
181003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 5400652 - 5400484
Alignment:
| Q |
65 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
164 |
Q |
| |
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|||| ||||| |||||||| ||||||||||| |||||||||||| || || ||||| || ||||||||||||||||| || | ||||||| |||| |
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| T |
5400652 |
gagtgaaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
5400553 |
T |
|
| Q |
165 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
233 |
Q |
| |
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| |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
5400552 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
5400484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 3541627 - 3541459
Alignment:
| Q |
65 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
164 |
Q |
| |
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|||| ||||| |||||||| ||||||||||| ||||||||||| | || || ||||| || ||||||||||||||||| || | ||||||| |||| |
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| T |
3541627 |
gagtgaaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
3541528 |
T |
|
| Q |
165 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
233 |
Q |
| |
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| |||| || ||||| | ||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
3541527 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
3541459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 31098935 - 31098805
Alignment:
| Q |
32 |
ttttactttttaacagataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtcc |
131 |
Q |
| |
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|||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| | | | | || ||||| |||| |
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| T |
31098935 |
ttttactttttaggggataaatccatttatatctagtaaaatgatcaacgaacacaagataatatttgtatccactgatagtgttaattggagagggtct |
31098836 |
T |
|
| Q |
132 |
ccaaacatcagaaaataacagttcaagagga |
162 |
Q |
| |
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||||||||||||||| | |||||||||||| |
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| T |
31098835 |
ccaaacatcagaaaaaatgagttcaagagga |
31098805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 26592504 - 26592600
Alignment:
| Q |
47 |
gataaatccaagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
143 |
Q |
| |
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|||||||||| | |||| |||||| || ||||||||||||||||| ||| | |||||||||| || || ||||| || ||||||||||||||||| |
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| T |
26592504 |
gataaatccatgtatatctagtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgttataggggatggtccccaaacatcaga |
26592600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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