View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_11 (Length: 536)
Name: NF11975_low_11
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Complemental strand, 55977871 - 55977355
Alignment:
| Q |
11 |
cataggaagtgaaagattggtcaccgccgttaccgttttcggtgtaagagttgaaggattgagttctaccgttggcgttatcggagtaagaagtgaaaac |
110 |
Q |
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| T |
55977871 |
cataggaagtgaaagattggtcaccgccgttaccgttttcggtgtaagagttgaaggattgagttctaccgttggcgttatcggagtaagaagtgaaaac |
55977772 |
T |
|
| Q |
111 |
ttcatttggaacgttggcttcagttgtgtattgcttgaactcgcccctgccgccggtggctccagcgccgtaagtgtgaaagctttgatcagcgacgttg |
210 |
Q |
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| T |
55977771 |
ttcgtttggaacgttggcttcagttgtgcattgcttgaactcgtccctgccgccggtggctccagcgccgtaagtgtgaaagctttgatcagcgacgttg |
55977672 |
T |
|
| Q |
211 |
gcgtttgtggc--gtagttggtgaaagtttctttatggccggcagagtttcggctgtagcgacggaaatcattcacctctccgtca-------------- |
294 |
Q |
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| T |
55977671 |
gcgtttgtggcgtgtagttggtgaaagtttctttatggccggcagagtttcggctgtagcgacagaaatcattcacctctccgtcagagtagtctccgtc |
55977572 |
T |
|
| Q |
295 |
-gagtagtttttgaacgagtcgtgtccaccgggtagactcgttccgtagttggtgaaattcttatcgctgtaagccttgaaattttcatcaccttcgtgc |
393 |
Q |
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| T |
55977571 |
cgagtagtttttgaacgagtcgtgtccaccgggtagactcgttccgtagttggtgaaattcttatcgctgtaagccttgaaattttcatcaccttcgtgc |
55977472 |
T |
|
| Q |
394 |
ttttcaagactctgggctacttccgggaagcagaggatgttggcggccgagcaaaattccggcaagcgtgtggatagcatgttgcctgaagctagcttcg |
493 |
Q |
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| T |
55977471 |
ttttcaagactctgggctacttccgggaggcagaggaggttggcggccgagcaaaattccggcaagcgtgtggatagcatgttgcctgaagctagcttcg |
55977372 |
T |
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| Q |
494 |
caaacgtcgctgcttcc |
510 |
Q |
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| T |
55977371 |
caaaggtcgctgcttcc |
55977355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 515
Target Start/End: Complemental strand, 14865542 - 14865031
Alignment:
| Q |
13 |
taggaagtgaaagattggtcaccgccgttaccgttttcggtgtaagagttgaaggattgagttctaccgttggcgttatcggagtaagaagtgaaaactt |
112 |
Q |
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| T |
14865542 |
taggaagtgaaagattgttgaccgctgttaccgttttctgtgtaagagttgaaggattgtgttcttccgttggcgctatcggagtaagaagtgaaaactt |
14865443 |
T |
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| Q |
113 |
catttggaacgttggcttcagttgtgtattgcttgaactcgcccctgccgccggtggctccagcgccgtaagtgtgaaagctttgatcagcgacgttggc |
212 |
Q |
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| T |
14865442 |
cgtttggaacgttggtttcagttgtgtatgttttgaactcgccgccgccgccggtggctccggcgccgtaagtgtggaagctttgatcggcgacgttggc |
14865343 |
T |
|
| Q |
213 |
gtttgtggcgtagttggtgaaagtttctttatggccggcagagtttcggctgtagcgacggaaatcattcacc---------tctccgtcagagtagttt |
303 |
Q |
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||| || |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| || ||||| ||||||||| |
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| T |
14865342 |
gttggtagcgtagctggtgaaggtttctttatggccggcggagtttcggctgtagcgacggaaatcgttcaccagaacgttttcaccgtcggagtagttt |
14865243 |
T |
|
| Q |
304 |
ttgaacgagtcgtgtccaccgggtagactcgttccgtagttggtgaaattcttatcgctgtaagccttgaaattttcatcaccttcgtgcttttcaagac |
403 |
Q |
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| T |
14865242 |
ttgaacgagtcaaatccaccgggtcgatccgttccgtagttggtgaagttcttgtctctgtaaatggcgaaatttacatcatctccgtgcttttcgagac |
14865143 |
T |
|
| Q |
404 |
tctgggctacttccgggaagcagaggatgttggcggccgagcaaaattccggcaagcgtgtggatagcatgttgcctgaagctagcttcgcaaacgtcgc |
503 |
Q |
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| T |
14865142 |
tctgggctacttccggcaagcagagtaggttcgcggctgagcaaaattccggcaggcgcgtggataacacgttgccggaagctagcttcgcgaacgtcgc |
14865043 |
T |
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| Q |
504 |
tgcttccacggt |
515 |
Q |
| |
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| T |
14865042 |
tgcttccacggt |
14865031 |
T |
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