View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11975_low_13 (Length: 520)
Name: NF11975_low_13
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 48636876 - 48637364
Alignment:
| Q |
19 |
atgtccctgtagccttttactgtatgagatgagacaaacttgataggttcttaattaagaaagaaaaggtctgtagttactaggtttttattcttctata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48636876 |
atgtccctgtagccttttactgtatgagatgagacaaacttgataggtttttaattaagaaagaaaaggtctgtagttactaggtttttattcttctata |
48636975 |
T |
|
| Q |
119 |
gtttataagtcaaaatagattgatgaggttgttgatttagccgtggtgtcaacattcgtgatggttgaagatttaaatggcatagcttagtaatttgtta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48636976 |
gtttataagtcaaaatagattgatgaggttgttgatttagccgtggtgtcaacattcgtgatggttgaagatttaaatggcatagcttagtaatttgtta |
48637075 |
T |
|
| Q |
219 |
taacctaatgatgtaaaattcttaatatcgtatgcaggttgcgcctccaaatgatgacgtgggagctcaatttgggccgaaaaactcccctgtcgtcgaa |
318 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48637076 |
taacctaatgacgtaaaattcttaatatcgtatgcaggttgcgcctccaaatgatgatgtgggagctcaatttgggccgaaaaactcccctgtcgtcgaa |
48637175 |
T |
|
| Q |
319 |
tggatacgtggtctcgggttagctaagtacgaagaagtttttgttagggaagaagttgattgggataccttgcaatggctgacagaagaggtgagtttat |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48637176 |
tggatacgtggtcttgggttagctaagtacgaagaagtttttgttagggaagaagttgattgggataccttgcaatggctgacagaagaggtgagtttat |
48637275 |
T |
|
| Q |
419 |
gttctgttcattttctcatttcacaccatcagtcctaggatcttatctttgccacagagacttattccttgaatttatttgactgttct |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48637276 |
gttctgttcattttctcatttcacaccatcagtcctaggatcttatctttgccacagagacttattccttgaatttatttgactgttct |
48637364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University