View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11975_low_14 (Length: 463)
Name: NF11975_low_14
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 22 - 444
Target Start/End: Original strand, 29511131 - 29511553
Alignment:
| Q |
22 |
caattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29511131 |
caattaaagattcacaaattgatttaccattatgaataagaactgggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaa |
29511230 |
T |
|
| Q |
122 |
atcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaataacttca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29511231 |
atcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaatcacttca |
29511330 |
T |
|
| Q |
222 |
tcagccatggctagttagagaagaatgaattgctatggaagaagaagaaatgtgtggctgtgacaaaggataaaggttggaactctcttatagagtgaga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29511331 |
tcagccatggctagttagagaagaatgaattgctatggaagaagaagaaatgtgtggctgtgacaaaggataaaggttggaactctcttatagagtgaga |
29511430 |
T |
|
| Q |
322 |
tatggaatatggaacggtgagtttgtgaggacatgtagacaatcttaactttggtgtggaccatgtttctagttctaggtgaaatttttaatttatgttt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29511431 |
tatggaatatggaacggtgagtttgtgaggacatgtagacaatcttaactttggtgtggaccatgtttctagttctaggtgaaattttgaatttatgttt |
29511530 |
T |
|
| Q |
422 |
cgacatatgttagattttgtcta |
444 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
29511531 |
cgacatatgttagattttgtcta |
29511553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 29518249 - 29518560
Alignment:
| Q |
22 |
caattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29518249 |
caattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggcttttgttccttaa |
29518348 |
T |
|
| Q |
122 |
atcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaataacttca |
221 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
29518349 |
atcttcttctctgtactcatgtttgatacccttttcagctaaggctattctgaccctcatgccaaatggacttacccagtaatctagcagaatcacttca |
29518448 |
T |
|
| Q |
222 |
tcagccatggctagt---tagagaagaatgaattgctatggaagaagaagaaatgtgtggctgtgacaaaggataaaggttggaactct---cttataga |
315 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||| | ||||| ||||||||| ||||||| |
|
|
| T |
29518449 |
tcagccatggctagtagaaagaaaagaatgaattgttatggaagaagaagaaatgtgtggctgtgagaaagtacaaaggatggaactctgtatttataga |
29518548 |
T |
|
| Q |
316 |
gtgagatatgga |
327 |
Q |
| |
|
||||||| |||| |
|
|
| T |
29518549 |
gtgagatgtgga |
29518560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 29535387 - 29535605
Alignment:
| Q |
24 |
attaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaaat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
29535387 |
attaaagattcacaaattgatttaccattatgaattagaacagggattttcttgtgaatagggttcatttgtaacaacaaagggcttttgttgcttaagt |
29535486 |
T |
|
| Q |
124 |
cttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaataacttcatc |
223 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
29535487 |
cttcttctctgtactcatacttgatacccttttcagctagggctattctgaccctcatgccaaatggacttacccagtaatctagcagaatcactttatc |
29535586 |
T |
|
| Q |
224 |
agccatggctagttagaga |
242 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29535587 |
agccatggctagttagaga |
29535605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 29507311 - 29507531
Alignment:
| Q |
22 |
caattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaa |
121 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
29507311 |
caattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtagcaacaaagggcttttgttgcttaa |
29507410 |
T |
|
| Q |
122 |
atcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaataacttca |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | ||||| ||| ||||| ||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
29507411 |
gtcttcttctctgtactcatgcttgatacccttttcagctaagactattttgagtctcattccaaatggacttggccagtaattaagcagaatcacttca |
29507510 |
T |
|
| Q |
222 |
tcagccatggctagttagaga |
242 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
29507511 |
tcagccatgactagttagaga |
29507531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 29549146 - 29549361
Alignment:
| Q |
22 |
caattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgtt------ |
115 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||| ||||| || |
|
|
| T |
29549146 |
caattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcatttctagcaacaaaggactctttttcaatga |
29549245 |
T |
|
| Q |
116 |
ccttaaatcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaata |
215 |
Q |
| |
|
| |||| ||||||||| |||| | || |||||||||||||||||| || |||||||| || || || ||||||||||||| ||| ||||||| |||||| |
|
|
| T |
29549246 |
cattaattcttcttctatgtatttatacttgatacccttttcagcaagtgctattctaactcttattccaaatggacttggccaaaaatctagaagaata |
29549345 |
T |
|
| Q |
216 |
acttcatcagccatgg |
231 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
29549346 |
acttcatcggccatgg |
29549361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 438
Target Start/End: Original strand, 29518594 - 29518701
Alignment:
| Q |
324 |
tggaatatggaacggtgagtttgtgaggacatgtagacaatcttaactttggtgtggaccatgtttctagttctaggtgaaatttttaatttatgtttcg |
423 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||||||| || |
|
|
| T |
29518594 |
tggaatatggaacagtgagtttgtgaggacatgtagacaatcttaactttggtatggaccat-------gttctaggcgaaatttaggatttatgttccg |
29518686 |
T |
|
| Q |
424 |
acatatgttagattt |
438 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29518687 |
acatatgttagattt |
29518701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 29505502 - 29505698
Alignment:
| Q |
33 |
tcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaaatcttcttctt |
132 |
Q |
| |
|
|||||||| ||||| |||||||| || ||||| || |||||||| |||| || |||||||||| | ||||| |||||||| || ||||| ||||| | |
|
|
| T |
29505502 |
tcacaaatggatttgccattatggattagaactggaattttcttgtgaattggattcatttgtaggagtaaaggactcttgttactgaaatcctcttcct |
29505601 |
T |
|
| Q |
133 |
tgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaataacttcatcagccat |
229 |
Q |
| |
|
||| | ||| ||||||||||||||| |||| || ||| ||||||||||||| | ||||||| |||| ||| || ||| || |||||||| ||||| |
|
|
| T |
29505602 |
tgttcacatacttgatacccttttcctctagtgcaattaggaccctcatgccataaggacttggccagaaatttaacaggattacttcatctgccat |
29505698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 29488404 - 29488271
Alignment:
| Q |
29 |
agattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaaatcttct |
128 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||| || || || || |||| ||||||||||| | | ||||| ||||| || || | ||||||| |
|
|
| T |
29488404 |
agattcacaaatggattttccattatggataagaactggaatcttgttgtgaattgggttcatttgaagaagtaaaggactcttatttctgagatcttct |
29488305 |
T |
|
| Q |
129 |
tctttgtactcatgcttgatacccttttcagcta |
162 |
Q |
| |
|
||||||||||||| || | || ||||||||||| |
|
|
| T |
29488304 |
tctttgtactcatatttaacactcttttcagcta |
29488271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 29502602 - 29502538
Alignment:
| Q |
29 |
agattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcattt |
93 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||| || || ||||| |||| |||||||||| |
|
|
| T |
29502602 |
agattcacaaatggattttccattatggataagaactggaatcttcttgtgaattgggttcattt |
29502538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University