View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_15 (Length: 453)
Name: NF11975_low_15
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 33 - 438
Target Start/End: Original strand, 5452903 - 5453304
Alignment:
| Q |
33 |
tctccacccaaagttaagtttgttgtttcccaatgttaag-agtagttgagtaaaattaactcacccattgtgccattacattgttcatgaagctcctta |
131 |
Q |
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| T |
5452903 |
tctccacccaaagttacatttgttgttttccaatgttaaggagtagttgagtaaaattaactcacccattgtgccatt----tgttcctgatgctcctta |
5452998 |
T |
|
| Q |
132 |
tatatatggtgatacatttagatatttggatcatcactaccgaaaaataattagaaccacccttcttaacacaatacaatctactcaaatcaaaatggcc |
231 |
Q |
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|||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5452999 |
tataaatggtgatacatttagctatttggttcatcactaccgaaaaataattagaaccagccttcttaacacaatacaatctactcaaatcaaaatggcc |
5453098 |
T |
|
| Q |
232 |
cctataaccacacctattgccgccattttagcagggaagattaacattaagatccactgtcgcgtaatccacatgtggacagttcctgattacaacaatc |
331 |
Q |
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| T |
5453099 |
cctataaccacacctattgccgccattttagcagggaagattaacattaagatccactgtcgcgtcatccacatgtggacagttcctgattacaacaatc |
5453198 |
T |
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| Q |
332 |
cgactgaagacggttgcatgcacatgttgctacttgatgaaaaggtacattagttagtttcctaccatgataagttgnnnnnnnncacatgttatagctt |
431 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
5453199 |
cgaatgaagacggttgcatgcacatgttgctacttgatgaaaaggtacattagttagtttcctaccagcataagttg-tttttttcacatgttatagctt |
5453297 |
T |
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| Q |
432 |
tacattt |
438 |
Q |
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| T |
5453298 |
tacattt |
5453304 |
T |
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