View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_16 (Length: 416)
Name: NF11975_low_16
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 34781908 - 34781512
Alignment:
| Q |
1 |
tatgttggtgattcatcctctcaagatattttaggaggaaagaagtttagctgcgacaccagctcttgcaagtggaacacacatgagattatgtgccctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34781908 |
tatgttggtgattcatcctctcaagatattttaggaggaaagaagtttatctgcgacaccagctcttgcaagaggaacacacatgagattatgtgccctt |
34781809 |
T |
|
| Q |
101 |
ggaactgtgagaccaggtctctcatccatgctaaccttagcatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaa |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||| | || |||||||| ||||| || || || | |
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| T |
34781808 |
ggaactgtgagaccaggtctctcttccatgctaaccttagcataatcaccattcaatatttctccatgttgaccaggtacttggagatcgaagcattgga |
34781709 |
T |
|
| Q |
201 |
taatagatgcaagcagtgttgccattcctgctgttgccaaattgactccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacc |
300 |
Q |
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| T |
34781708 |
taatagatgcaatcattgtggccattcctgcagtagccaaattgactccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacc |
34781609 |
T |
|
| Q |
301 |
cctaagatcaattgaagctgcttcaccttcaccaacattttctataaacctctctggacgaaattccaatggctttacccaatattttgggtctctt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34781608 |
cctaagatcaattgaagctgcttcaccttcaccaacattttctatgaacctctctggacgaaattccaatggctttacccaatattttgggtctctt |
34781512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 397
Target Start/End: Original strand, 34754329 - 34754697
Alignment:
| Q |
29 |
ttttaggaggaaagaagtttagctgcgacaccagctcttgcaagtggaacacacatgagattatgtgcccttggaactgtgagaccaggtctctcatcca |
128 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || || |||| |
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| T |
34754329 |
ttttaggaggaaagaagtttatctgcgacaccagctcttgtgagtggaacacacatgagattatgtgtccttggaactgtgagaccaggcctttcttcca |
34754428 |
T |
|
| Q |
129 |
tgctaaccttagcatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataatagatgcaagcagtgttgccattcc |
228 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
34754429 |
tgctaacctttgcatcatcacctttcaatatttgtccttgtgggcctggtacctgcagatcaaagcactggataatagatgcaagcagtgtggccattcc |
34754528 |
T |
|
| Q |
229 |
tgctgttgccaaattgactccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcacct |
328 |
Q |
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||| || ||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
34754529 |
tgcagtagccaaattgactccaggacacattctccttccggacccaaatggtagaagttggaaatgctgacccctaagatcaattgaagctgcttcacct |
34754628 |
T |
|
| Q |
329 |
tcaccaacattttctataaacctctctggacgaaattccaatggctttacccaatattttgggtctctt |
397 |
Q |
| |
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| T |
34754629 |
tcaccaacattttctataaacctctctggacgaaattccaatggctttacccaatattttgggtctctt |
34754697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 36 - 397
Target Start/End: Original strand, 34762315 - 34762682
Alignment:
| Q |
36 |
aggaaagaagtttagctgcgacaccagctcttgcaagtggaacacacatgagattatgtgcccttggaactgtgagaccaggtctctcatccatgctaac |
135 |
Q |
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||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
34762315 |
aggaaaggagtttagcagcaacaccagctcttgcaagtggaacacacatgagattatgtgctcttggaaccgtaagaccaggtctctcatccatgctaac |
34762414 |
T |
|
| Q |
136 |
cttagcatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataatagatgcaagcagtgttgccattcctgctgtt |
235 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |
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| T |
34762415 |
cttaacatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataattgatgaaagtagtgttgccattcctgctgtt |
34762514 |
T |
|
| Q |
236 |
gccaaattgactccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcacc-- |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34762515 |
gccaaattgactccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcacctt |
34762614 |
T |
|
| Q |
334 |
----aacattttctataaacctctctggacgaaattccaatggctttacccaatattttgggtctctt |
397 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
34762615 |
ggcttgcattttctaagaacctctctggacgaaattccaatggtttttcccaatattttgggtctctt |
34762682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 23244718 - 23244639
Alignment:
| Q |
248 |
ccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcacc |
327 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||| || ||||||| |
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| T |
23244718 |
ccaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
23244639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 9381242 - 9381276
Alignment:
| Q |
245 |
actccaggacacatccttcttccagacccaaatgg |
279 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
9381242 |
actccaggacacatccttcttcctgacccaaatgg |
9381276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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