View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_17 (Length: 413)
Name: NF11975_low_17
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 16463808 - 16464185
Alignment:
| Q |
18 |
agttttacatttacattttcttctattttactttgtccactaatagtcacatgtttattgtgtcgtaaactaataaaacttgtagcgttaaacagtaata |
117 |
Q |
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| T |
16463808 |
agttttacatttacattttcttctattttactttgtccactaatagtcacatgtttattgtgttgtaaactaataaaacttgtagcattaaacagtaata |
16463907 |
T |
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| Q |
118 |
tattaatctttcaagttcatttgttgttggaacttggaaggatatatttcctcaccaacatctatcatacaccacaaattaaaaccttgcaaaattaaca |
217 |
Q |
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| T |
16463908 |
tattaatctttcaagttcatttgttgttggaacttggaaggatatatttcctcaccaacatctatcatacaccacaaattaaaaccttgcaaaattaata |
16464007 |
T |
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| Q |
218 |
acaattcctcagaaaactaatacattaattagcttaaaatagaaacaacnnnnnnnnnnnnnnnnnnnnnnnggttagcggaactaaattattattgttt |
317 |
Q |
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| T |
16464008 |
acaattcctcagaaaactagtacattaattagcttaaaatagaaacaacttttttttctttttcttcttttcggttagcggaactaaattattattgttt |
16464107 |
T |
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| Q |
318 |
gatgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtg |
395 |
Q |
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| T |
16464108 |
gatgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtg |
16464185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 16471115 - 16471207
Alignment:
| Q |
303 |
aaattattattgtttgatgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtg |
395 |
Q |
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| T |
16471115 |
aaattcttattgtctgatgagttctctaaatgtgaaagcatatcaggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtg |
16471207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 16493604 - 16493679
Alignment:
| Q |
320 |
tgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtg |
395 |
Q |
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| T |
16493604 |
tgagttctctaaatctgaaagcatatcagatgacaatcgaagcagacgaagacttctctccattttaagttctgtg |
16493679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 16470974 - 16471024
Alignment:
| Q |
18 |
agttttacatttacattttcttctattttactttgtccactaatagtcaca |
68 |
Q |
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| T |
16470974 |
agttttacatttacattttattctattttactttgtccaccaatagtcaca |
16471024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 16471036 - 16471081
Alignment:
| Q |
221 |
attcctcagaaaactaatacattaattagcttaaaatagaaacaac |
266 |
Q |
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| T |
16471036 |
attcctcagaaaactagtacattaattagcttaaaatagaaacaac |
16471081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 16499019 - 16499058
Alignment:
| Q |
356 |
gcgaagcaaacgaagacttctctccattttaagttctgtg |
395 |
Q |
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| T |
16499019 |
gcgaagcaaacgaagacttctctccattttaagttctgtg |
16499058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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