View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_19 (Length: 357)
Name: NF11975_low_19
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 4878826 - 4878500
Alignment:
| Q |
20 |
acttgattatcattagtagcaagcattctgctaggtcctctttgatccatgaacaaatcagtttcgtcgtcgccggtgactaagcagtgaaagccaatgc |
119 |
Q |
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| T |
4878826 |
acttgattatcattagtagcaagcattctgctaggtcctctttgatccatgaacaaatcagtttcgtcgtcgccggtgactaagcagtgaaagccaatgc |
4878727 |
T |
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| Q |
120 |
atctttgaacttgagtattgttgttgttcaacttggaatccaaagcagcagcaaccttgttatggagttgtgtgatgaataatatcaacaacacgagagn |
219 |
Q |
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| T |
4878726 |
atctttgaacttgagtattgttgttgttcaacttggaatccaaagcagcagcaaccttgttatggagttgtgtgatgaataatatcaacaacactagaga |
4878627 |
T |
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| Q |
220 |
nnnnnntcccttcatttttcttaaaaaataaaattaagatatttggtgccagtttaattcatcaatatataaagaatcaaagaataatttggggtgcatt |
319 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4878626 |
aaaaaatcccttcatttttcttaaaaaataaaattaagctatttggtgacaatttaattcatcaatatataaagaatcaaagaataatttggggtgcatt |
4878527 |
T |
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| Q |
320 |
aacaaattgttctttcactcactctct |
346 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4878526 |
aacaaattgttctttcactcactctct |
4878500 |
T |
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