View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_2 (Length: 761)
Name: NF11975_low_2
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 8868541 - 8869034
Alignment:
| Q |
19 |
ctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttca |
118 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8868541 |
ctaaatatgtgaatatttcttcatgtctcaattggagctctaaatcccaagggtattatatttatgctatggctggtgatttaattgctgatgattttca |
8868640 |
T |
|
| Q |
119 |
agttggttgtcatgtgatgttagttactccaacgtcttggttgagaaacttgcaaggaaatgaagtcgtttcttatgatgttattcgcaaggcgttagaa |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8868641 |
agttggttgtcatgtgatgttggttactccaacgtcttggttgagaaacttgcaaggaaatgaagtggtttcttatgatgttattcgcaaggcgttagaa |
8868740 |
T |
|
| Q |
219 |
tatggatttgagatttcatggttgcgtcatatttttcaagatcgttgcaaaggtagtacgcaatgctccttagacgcttcaactgagacgcttcaatgcg |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
8868741 |
tatggatttgagatttcgtggttgcgtcatatttttcaagatcgttgcaaaggtagtacgcaatgctccttaaacacttcaactgagacgcttcaatgcg |
8868840 |
T |
|
| Q |
319 |
tttgcttttgccagagtttctggggaccttggagcgaaacttgtggtaaatattacttcactcaacttgattttcattagtctaaatatcatggtcattc |
418 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
8868841 |
tttgcttttgccggagtttctggggaacttggagcgaaacttgtggtaaatattacttcactcaacttgattttcattagtttaaagatcatggtcattc |
8868940 |
T |
|
| Q |
419 |
acaatttagtctttcacaaagctttgaattattaagtttaaaaatcccttgactcggcatcttcctggaaaacaaactagaatattaatggtag |
512 |
Q |
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| T |
8868941 |
acaatttagtctttgacaaagctttgaatcattaagtttaaaaatcccttgactcagcatcttcctggaaaacaaactagaatattaatggtag |
8869034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 547 - 746
Target Start/End: Original strand, 8869033 - 8869236
Alignment:
| Q |
547 |
agctcgaccgtgaatgatggacatccaaagacagtccagagtgataacaaaagtagtaggccaattctcatcactcatgataaaatagcctttccaattc |
646 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8869033 |
agctcgaccgtgaatgatggccatccaaagacagtccagagtgataacaaaagtagtaagccaattctcatcactcatgataaaatagcctttccaattc |
8869132 |
T |
|
| Q |
647 |
ctcaacaa----tcattcaataggatcccagcaccaaaagtttgagctaatattatggatgcattcactatcatgtgttagtctgcgctaaccacgattt |
742 |
Q |
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| T |
8869133 |
ctcaacaatcattcattcaataggatcccagcaccaaaagtttgagctaatattatggatgcattcactatcatgtgttagtctgcgctaaccacgattt |
8869232 |
T |
|
| Q |
743 |
tcat |
746 |
Q |
| |
|
|||| |
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|
| T |
8869233 |
tcat |
8869236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 8864293 - 8864433
Alignment:
| Q |
19 |
ctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttca |
118 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
8864293 |
ctaaatatgtgaatacttcttcatgtctgaatttgaactccaaatccaaagggtattatatatatgctatggctggtgatttaattgctcaagattttca |
8864392 |
T |
|
| Q |
119 |
agttggttgtcatgtgatgttagttactccaacgtcttggt |
159 |
Q |
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||||||||||||||||| || ||||||||||| ||||||| |
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| T |
8864393 |
agttggttgtcatgtgaaattggttactccaacttcttggt |
8864433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 9100031 - 9100210
Alignment:
| Q |
60 |
aaatccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggt |
159 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| | ||| ||||| | |||||||||||||||||||||| || |||||| |||| || || |||| |
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| T |
9100031 |
aaatccaaagggtattatatttatgctattgctggtaaattagttgctcaagattttcaagttggttgtcatgcgaagttagtggctcccacttcatggt |
9100130 |
T |
|
| Q |
160 |
tgagaaacttgcaaggaaatgaagtcgtttcttatgatgttattcgcaaggcgttagaatatggatttgagatttcatgg |
239 |
Q |
| |
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|| |||| |||||| ||||| |||| |||| |||||| | |||| |||||||||| |||||||||||||||||||||| |
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| T |
9100131 |
tgggaaatttgcaaagaaatcaagtactttcatatgatatcattcataaggcgttagtatatggatttgagatttcatgg |
9100210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 63 - 241
Target Start/End: Original strand, 9136720 - 9136895
Alignment:
| Q |
63 |
tccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttga |
162 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||| | |||||||| ||| ||||||| | |
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|
| T |
9136720 |
tccaaagggtattctatttatgctatggctggtgatttagttgctcaagattttcaagttggctgtcatgtgaaatcagttactctaacttcttggtcgg |
9136819 |
T |
|
| Q |
163 |
gaaacttgcaaggaaatgaagtcgtttcttatgatgttattcgcaaggcgttagaatatggatttgagatttcatggtt |
241 |
Q |
| |
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| T |
9136820 |
g---tttgcaaagaaatcaattacttacatatgatgtcattcataaggcgttagtgtatggatttgaggtttcatggtt |
9136895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 8972020 - 8971932
Alignment:
| Q |
73 |
attatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttg |
161 |
Q |
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|
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||||| |||| |||| |
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| T |
8972020 |
attatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacatctttgttg |
8971932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 9007048 - 9006960
Alignment:
| Q |
73 |
attatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactccaacgtcttggttg |
161 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||||| |||| |||| |
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| T |
9007048 |
attatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatgtgaaattggttactccaacatctttgttg |
9006960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 9072454 - 9072678
Alignment:
| Q |
19 |
ctaaatatgttgatacttcttcatgtctcaatt-ggagctctaaatccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttc |
117 |
Q |
| |
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|||||||||| |||||||||| ||||||| | |||| || ||||| ||||| ||||||||||||||||| |||||| || ||| |||||| ||||| | |
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| T |
9072454 |
ctaaatatgtgaatacttcttcctgtctcactcaggag-tccaaatcaaaaggctattatatttatgctatagctggtcatataactgctgaagatttac |
9072552 |
T |
|
| Q |
118 |
aagttggttgtcatgtgatgttagttactccaacgtcttggttgagaaacttgcaaggaaatgaagtcgtttcttatgatgttattcgcaaggcgttaga |
217 |
Q |
| |
|
|||||||||||||||||| || ||||||| || ||| |||| |||||||||||| |||| | || ||||||| || | ||||| |||| |
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| T |
9072553 |
aagttggttgtcatgtgaaatttattactcccacttct---ttgaagggtttgcaaggaaatcaagtaatatcatatgatgaaatacaaaaggcattagt |
9072649 |
T |
|
| Q |
218 |
atatggatttgagatttcatggttgcgtc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
9072650 |
gtatggatttgagatttcatggttgcgtc |
9072678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 9065297 - 9065209
Alignment:
| Q |
60 |
aaatccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatgttagttactcc |
148 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||||| ||||| || |||||||||||||||||||||| || |||||||| |
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| T |
9065297 |
aaatccaaaggcaattatatttatgctatagttggtgatttaacggctgaggactttcaagttggttgtcatgtgaaattggttactcc |
9065209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 9093667 - 9093723
Alignment:
| Q |
79 |
tttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtga |
135 |
Q |
| |
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||||||||||||||||||||||||||| || || |||||||||||||||||||||| |
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|
| T |
9093667 |
tttatgctatggctggtgatttaattgtcgaagactttcaagttggttgtcatgtga |
9093723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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