View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_23 (Length: 304)
Name: NF11975_low_23
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 50054678 - 50054392
Alignment:
| Q |
1 |
gtttcgaggtacagagaaaagcgaagaacaaggttgttctcaaagaaaataaggtacgaggttaggaaattgaatgcagagaagagaccaagaatgaaag |
100 |
Q |
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| T |
50054678 |
gtttcgaggtacagagaaaagcgaagaacaaggttgttctcaaagaaaataaggtacgaggttaggaaattgaatgcagagaagagaccaagaatgaaag |
50054579 |
T |
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| Q |
101 |
ggagatttgtgaagagggcttcctttgcagttccaacatttcctttgctaaaataaataagagttagcatttgttgggttactttacccctaatcttttt |
200 |
Q |
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| T |
50054578 |
ggagatttgtgaagagggcttcctttgcagttccaacatttcctttgctaaaataaataagagttagcatttgttgggttactttacccctaatcttttt |
50054479 |
T |
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| Q |
201 |
gtagtatgtgcaaaaagtaataatttgttactttatgagtttgcatttcgttttactttagtttcccaccactttgtatatataaac |
287 |
Q |
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| T |
50054478 |
gtagtatgtgctaaaagtaataatttgttgctttatgagtttgcatttcgttttactttagtttcccaccactttgtatagataaac |
50054392 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 43869104 - 43869198
Alignment:
| Q |
7 |
aggtacagagaaaagcgaagaacaaggttgttctcaaagaaaataaggtacgaggttaggaaattgaatgcagagaagagaccaagaatgaaagg |
101 |
Q |
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||||||||||| || |||||||| | ||||| ||||||| ||||| || || || ||||||||||||||||| |||||||||||||||||||| |
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| T |
43869104 |
aggtacagagagaaaagaagaacacgtttgtttgcaaagaagataagatatgaagtaaggaaattgaatgcagaaaagagaccaagaatgaaagg |
43869198 |
T |
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