View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_24 (Length: 303)
Name: NF11975_low_24
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 14699187 - 14698915
Alignment:
| Q |
20 |
cccaatacgatccaccactacaccactctccaactcaatcttcaaatctaaatacgtatttgccattcactctttctctcttgtttcttattcttcacga |
119 |
Q |
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| T |
14699187 |
cccaatacgatccaccactacacccctctccaactcaatcttcaaatctaaacacgtatttgccattcaccctt-ctctcttgtttcttattcttcacga |
14699089 |
T |
|
| Q |
120 |
aattattcacagtatacacactcatgaagctacttgcttgttttttgtagattttcttacatgaatggtggcttgtgaaacctccaaaccaatgcaaggg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14699088 |
aattattcacagtatacacactcatgaagctacttgcttgttttt-gtagattttcttacatgaatggtggcttgtgaaacctccaaaccaatgcaaggg |
14698990 |
T |
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| Q |
220 |
tttagcgcttgctggcattgcttcaatggagtaa-nnnnnnnactttcatttttaggtttctgattggttctctg |
293 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14698989 |
tttagcgcttgctggcattgcttcaatggagtaattttttttactttcatttttaggtttctgattggttctctg |
14698915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 17649712 - 17649984
Alignment:
| Q |
20 |
cccaatacgatccaccactacaccactctccaactcaatcttcaaatctaaatacgtatttgccattcactctttctctcttgtttcttattcttcacga |
119 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
17649712 |
cccaatacgatccaccactacacccctctccaactcaatcttcaaatctaaacacgtatttgccattcagtctt-ctctcttgtttcttattcttcacga |
17649810 |
T |
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| Q |
120 |
aattattcacagtatacacactcatgaagctacttgcttgttttttgtagattttcttacatgaatggtggcttgtgaaacctccaaaccaatgcaaggg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17649811 |
aattattcacagtatacacactcatgaagctacttgcttgtttt-tgtagattttcttacatgaatggtggcttgtgaaacctccaaaccaatgcaaggg |
17649909 |
T |
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| Q |
220 |
tttagcgcttgctggcattgcttcaatggagtaa-nnnnnnnactttcatttttaggtttctgattggttctctg |
293 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17649910 |
tttagcgcttgctggcattgcttcaatggagtaattttttttactttcatttttaggtttctgattggttctctg |
17649984 |
T |
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