View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11975_low_26 (Length: 292)
Name: NF11975_low_26
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3607777 - 3608002
Alignment:
| Q |
1 |
agattgaataatgtggtgaactataggcctgtggactcatgtgattcagactcaatttgaggatagcttgagaatctgagtcattgttaggattactggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3607777 |
agattgaataatgtggtgaactataggcctttggactcatgtgattcagactcaatttgaggatagcttgagaatctgagtcattgttaggattactagt |
3607876 |
T |
|
| Q |
101 |
tccatataagtggttgttattctcatcctcttcaaactatgcaaagtggaggttcatttccttgatattttcttctcattctttctcctttcccccgcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3607877 |
tccatataagtggttgttattctcatcctcttcaaactatgcaaagtggaggttcatttccttgatattttcttctcattctttct--------ccgcgt |
3607968 |
T |
|
| Q |
201 |
tcacaacttcttttatccttgtaggttgataatt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3607969 |
tcacaacttcttttatccttgtaggttgataatt |
3608002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University