View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_27 (Length: 283)
Name: NF11975_low_27
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 32600832 - 32600578
Alignment:
| Q |
1 |
ctggaggatggaatggtaattaactaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtatatcaaactccaatattaatttctca |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
32600832 |
ctggaggatggaatggtaattaattaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcg |
32600733 |
T |
|
| Q |
101 |
tatgtgccattaatgttttgatattaattagatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatct |
200 |
Q |
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|||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |
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| T |
32600732 |
tatgtgtcattaatgtttggatatta----gatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatct |
32600637 |
T |
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| Q |
201 |
gggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaat |
259 |
Q |
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| T |
32600636 |
gggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaat |
32600578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 32590384 - 32590130
Alignment:
| Q |
1 |
ctggaggatggaatggtaattaactaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtatatcaaactccaatattaatttctca |
100 |
Q |
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||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
32590384 |
ctggaggatggaatggtaattaattaacctcactaataattttatgaatgttaagtttaagatcattacaagtacatcaaactccaatattaattcctcg |
32590285 |
T |
|
| Q |
101 |
tatgtgccattaatgttttgatattaattagatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatct |
200 |
Q |
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| T |
32590284 |
tatgtgtcattaatgtttggatatta----gatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatct |
32590189 |
T |
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| Q |
201 |
gggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaat |
259 |
Q |
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| T |
32590188 |
gggcattagctaaggtgcatgaaataatttttatatacctattgttgagacaaagtaat |
32590130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 24883687 - 24883774
Alignment:
| Q |
130 |
agatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatctgggcattagctaaggtg |
217 |
Q |
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| T |
24883687 |
agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttcagcatatgggcattagttaaggtg |
24883774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 34578144 - 34577897
Alignment:
| Q |
1 |
ctggaggatggaatggtaattaactaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtatatcaaactccaatattaatttctca |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
34578144 |
ctggaggatggaatggtaattaattaacctcactagtaatgttatgcatgttaaacttaagatcattacaagtacatcaaactccaatattaattcctcg |
34578045 |
T |
|
| Q |
101 |
tatgtgccattaatgttttgatattaattagatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatct |
200 |
Q |
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|||||| ||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | |
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| T |
34578044 |
tatgtgtcattaatgtttggat----attagatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatatcgtgcccatttcagcattt |
34577949 |
T |
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| Q |
201 |
gggcattagctaaggtgcatgaaataatttttatatacctattgttgagaca |
252 |
Q |
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| T |
34577948 |
gggcattagctaaggtacatgaaacactttttatatacatattgttgagaca |
34577897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 34593856 - 34593767
Alignment:
| Q |
127 |
attagatcctgatatgctcgaagttggaaatggaggaatgacaacagaagaatatcgtgcccatttcagcatctgggcattagctaaggt |
216 |
Q |
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|||||||||||| ||||| || ||||| |||||||| ||||| ||||||||||||||| | ||||||||||| ||||| ||||||||||| |
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| T |
34593856 |
attagatcctgacatgcttgaggttgggaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt |
34593767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 27532378 - 27532418
Alignment:
| Q |
130 |
agatcctgatatgctcgaagttggaaatggaggaatgacaa |
170 |
Q |
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| T |
27532378 |
agatcctgatatgcttgaggttggaaatggagggatgacaa |
27532418 |
T |
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