View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_28 (Length: 272)
Name: NF11975_low_28
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 53480546 - 53480290
Alignment:
| Q |
16 |
catttttatccaaagataacttaacatgacctattaaatctctcacgcaatgccatcccactcactcgatgatctttccaaaacacagtgtcactaccat |
115 |
Q |
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| T |
53480546 |
catttttatccaaagataacttaacatgacctattaaatctctcacgcaatgccatcccactcactcaaggatctttccaaaacatagtgtcactaccat |
53480447 |
T |
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| Q |
116 |
cgcccataatctttgaaagattattattaaaccaattaacatgaacaatggctttcatgatactaattaattgaatatccttccaccagatagaatcctt |
215 |
Q |
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| T |
53480446 |
cgcccataatctttgaaagattattattaaaccaattaacatgaacaatggctttcatgatactaattaattgaatatccttccaccaaataaaatcctt |
53480347 |
T |
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| Q |
216 |
atgagatccatccaaaattctacagcaacacacactaatttacactataataccatt |
272 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53480346 |
atgagatccatccaaaattctacaacaacacacactaatttacactataataccatt |
53480290 |
T |
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