View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11975_low_30 (Length: 254)
Name: NF11975_low_30
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_30 |
 | |
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| [»] scaffold0007 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 925641 - 925879
Alignment:
| Q |
1 |
catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
925641 |
catcaacaaaagtcaggggcaatcactcaaacaggttggcatttaccttccacaaccagtattctatcatggtcaactctacgtagccatatcaagggtt |
925740 |
T |
|
| Q |
101 |
acatcaaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
925741 |
acatcaaggaaagggctgaaaattttgctgttagatgaaaacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt |
925840 |
T |
|
| Q |
201 |
agttgatttcactttgtttatttatctgttctgtttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
925841 |
agttgatttcactttgtttatttatctgttctgtttcat |
925879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44703211 - 44702973
Alignment:
| Q |
1 |
catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44703211 |
catcaacaaaagtcaggggcagtcactcaaacaggttgacatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt |
44703112 |
T |
|
| Q |
101 |
acatcaaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt |
200 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || |
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|
| T |
44703111 |
acatcaaggaaatggctgaatattttgctgttggatgaacacggttgctgcattgataataccaataatgttgttttcaaggagatttttcgtaacggtt |
44703012 |
T |
|
| Q |
201 |
agttgatttcactttgtttatttatctgttctgtttcat |
239 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| |||||| |
|
|
| T |
44703011 |
agttaatttcactctgtttatttatttgttctatttcat |
44702973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 13364288 - 13364198
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaa |
95 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||| ||| || |||||| | || | ||||| |||||||||||||| ||||| ||||||| |
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|
| T |
13364288 |
aacaaaagtcaagggcagtcactaaaacaagttgacatatatcttccaaaggcaattttctcgcatggtcaactctatgtagcaatatcaa |
13364198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 46921695 - 46921626
Alignment:
| Q |
69 |
atggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga |
138 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| | ||||| || || ||||||||||||| |||||||| |
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|
| T |
46921695 |
atggtcaactttatgtagcaatatcaagggttgcctcaagaaatggtttgaaaattttgctattagatga |
46921626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 43026700 - 43026466
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43026700 |
aacaaaagtcaggggcagtcactcaagcaggttggcatttacattctacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat |
43026601 |
T |
|
| Q |
105 |
caaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
43026600 |
caaggaaagggctgaaaattttgctgttagatgaacacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaacgtttagtt |
43026501 |
T |
|
| Q |
205 |
gatttcactttgtttatttatctgttctgtttcat |
239 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| |
|
|
| T |
43026500 |
aatttcactctgtttatttatctgttatgtttcat |
43026466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 30442997 - 30442893
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat |
104 |
Q |
| |
|
|||||||||||||| || ||||| || | |||||||| || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||| |
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|
| T |
30442997 |
aacaaaagtcagggacaatcacttaagtaagttggcatctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacat |
30442898 |
T |
|
| Q |
105 |
caagg |
109 |
Q |
| |
|
||||| |
|
|
| T |
30442897 |
caagg |
30442893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5454129 - 5454367
Alignment:
| Q |
1 |
catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5454129 |
catcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctatgtagccatatcaagggtt |
5454228 |
T |
|
| Q |
101 |
acatcaaggaaagggctgaaaattttgctgttagatgataacggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgttt |
200 |
Q |
| |
|
|||||||||||||| || ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
5454229 |
acatcaaggaaaggacttaaaattttgttgttggatgaacacggttgctgcattgatagtaccaataatgttgttttcaacgagatttttcgtaacgttt |
5454328 |
T |
|
| Q |
201 |
agttgatttcactttgtttatttatctgttctgtttcat |
239 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
5454329 |
agttaatttcactctgtttatttatctgttctgtttcat |
5454367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 30176455 - 30176365
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaa |
95 |
Q |
| |
|
||||||||||| | || ||||||||||| |||||||| || ||| ||||| |||| ||||| ||||||||||| || || || ||||||| |
|
|
| T |
30176455 |
aacaaaagtcaaagacaatcactcaaacaagttggcatatatctttcacaatcagtgttctcgcatggtcaactgtatgttgcgatatcaa |
30176365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 79410 - 79276
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||| |||| ||||||||||| || ||||| |||||| | ||||| | |
|
|
| T |
79410 |
aacaaaagtcaagggcagtcactcaaacaagttgacatatatcttccacaaccagtgttcttgcatggtcaactttatgtagcaatatcaggagttactt |
79311 |
T |
|
| Q |
105 |
caaggaaagggctgaaaattttgctgttagatgat |
139 |
Q |
| |
|
||||||| || |||||||||| ||| |||||||| |
|
|
| T |
79310 |
caaggaatggtctgaaaatttcgctaatagatgat |
79276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 26533381 - 26533471
Alignment:
| Q |
20 |
cagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagga |
110 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| |||||| ||||||||||||||||||| || || || ||||||||||||| |||||||| |
|
|
| T |
26533381 |
cagtcactcaaacaagttggtgtataccttctacaacccgtattctctcatggtcaacattatgttgcaatatcaagggttatatcaagga |
26533471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 9853274 - 9853395
Alignment:
| Q |
7 |
caaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatca |
106 |
Q |
| |
|
||||||||| || |||||||||||| | |||||||| || ||||||||||| || ||||| |||| ||||| || ||||| ||||| || ||||| ||| |
|
|
| T |
9853274 |
caaaagtcaaggacagtcactcaaataagttggcatatatcttccacaacc-gtgttctcgcatgaacaactttatgtagcaatatcgagagttacttca |
9853372 |
T |
|
| Q |
107 |
aggaaagggctgaaaattttgct |
129 |
Q |
| |
|
||| | || |||||||||||||| |
|
|
| T |
9853373 |
agggatggcctgaaaattttgct |
9853395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 32263117 - 32263251
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctct-catggtcaactctacgtagccatatcaagggttaca |
103 |
Q |
| |
|
||||||| ||| |||||||||| |||||| || ||||| || || ||||||||||| || | | ||| ||||||| || ||||| |||||||| ||||| |
|
|
| T |
32263117 |
aacaaaaatcaagggcagtcacgcaaacaagtaggcatatatctcccacaaccagttttttttgcattgtcaactttatgtagcaatatcaagagttact |
32263216 |
T |
|
| Q |
104 |
tcaaggaaagggctgaaaattttgctgttagatga |
138 |
Q |
| |
|
|||| || || ||||||||||||| ||||||| |
|
|
| T |
32263217 |
tcaatgagtggtttgaaaattttgctaatagatga |
32263251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 35615209 - 35615341
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat |
104 |
Q |
| |
|
||||||||||| || ||||||| |||||| || ||||| || || ||||||||||| || | ||||||||||| || ||||| |||| ||| ||||| | |
|
|
| T |
35615209 |
aacaaaagtcaaggacagtcacgcaaacaagtaggcatatatctcccacaaccagtttttttgcatggtcaactttatgtagcaatat-aagagttactt |
35615307 |
T |
|
| Q |
105 |
caaggaaagggctgaaaattttgctgttagatga |
138 |
Q |
| |
|
||||||| || || |||||||||| ||||||| |
|
|
| T |
35615308 |
caaggaatggtctagaaattttgctaatagatga |
35615341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 21314493 - 21314400
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaaggg |
98 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||||| |||||||||| |
|
|
| T |
21314493 |
aacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaatatcaaggg |
21314400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 14231898 - 14232002
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacat |
104 |
Q |
| |
|
|||||||||||||| || ||||| || || |||||||| || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||| |
|
|
| T |
14231898 |
aacaaaagtcagggacaatcacttaagcaagttggcatctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacat |
14231997 |
T |
|
| Q |
105 |
caagg |
109 |
Q |
| |
|
||||| |
|
|
| T |
14231998 |
caagg |
14232002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 40674544 - 40674471
Alignment:
| Q |
5 |
aacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact |
78 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||| || ||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
40674544 |
aacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacaaccaatgttctcacatggtcaact |
40674471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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