View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11975_low_35 (Length: 220)
Name: NF11975_low_35
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5278652 - 5278457
Alignment:
| Q |
1 |
ccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgttt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5278652 |
ccttatagtacttgaaggcactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtgctcaacaagggtgatgtgttt |
5278553 |
T |
|
| Q |
101 |
gtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatc |
196 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
5278552 |
gtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggagttatc |
5278457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5282444 - 5282639
Alignment:
| Q |
1 |
ccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgttt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |
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|
| T |
5282444 |
ccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctcaacaagggtgatgtgttt |
5282543 |
T |
|
| Q |
101 |
gtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatc |
196 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5282544 |
gtgttcccgattggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatc |
5282639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5286633 - 5286438
Alignment:
| Q |
1 |
ccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgttt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
5286633 |
ccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatcgtctctttaccaaggtgctcaacaagggtgatgtgttt |
5286534 |
T |
|
| Q |
101 |
gtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatc |
196 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
5286533 |
gtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgccgttgctattgctggacttagcagtcaaaatccaggagttatc |
5286438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 20358019 - 20357824
Alignment:
| Q |
1 |
ccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgttt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
20358019 |
ccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatcgtctctttaccaaagtgctcaacaagggtgatgtgttt |
20357920 |
T |
|
| Q |
101 |
gtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatc |
196 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
20357919 |
gtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaatgccgttgctattgctggacttagcagtcaaaatccaggagttatc |
20357824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 20353836 - 20354027
Alignment:
| Q |
1 |
ccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgttt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |
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|
| T |
20353836 |
ccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctcaacaagggtgatgtgttt |
20353935 |
T |
|
| Q |
101 |
gtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagt |
192 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
20353936 |
gtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggagt |
20354027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 6235605 - 6235410
Alignment:
| Q |
1 |
ccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgttt |
100 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || || |||||||||||||||||| |
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|
| T |
6235605 |
ccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatcgtctcttcaccaaagtgctaaacaagggtgatgtgttt |
6235506 |
T |
|
| Q |
101 |
gtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatc |
196 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6235505 |
gtgttcccaattggtcttattcattttcaactaaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatc |
6235410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 702528 - 702401
Alignment:
| Q |
62 |
cgtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgcta |
161 |
Q |
| |
|
|||||| |||| || ||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || ||||||| |
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|
| T |
702528 |
cgtctcattacaaaagtactgaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgcta |
702429 |
T |
|
| Q |
162 |
ttgctggacttagcagtcaaaacccagg |
189 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |
|
|
| T |
702428 |
ttgctggacttagcagccaaaatccagg |
702401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 710854 - 710676
Alignment:
| Q |
2 |
cttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgtttg |
101 |
Q |
| |
|
|||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| | || || ||||| ||||| || |||||||||| |
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|
| T |
710854 |
cttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcatcacaaaagtactgaacaaaggagatgtgtttg |
710758 |
T |
|
| Q |
102 |
tgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaa |
183 |
Q |
| |
|
|||| || || ||||| ||||| || || |||||||||||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
710757 |
tgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagccaaaa |
710676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 717815 - 717709
Alignment:
| Q |
77 |
gtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagca |
176 |
Q |
| |
|
||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
717815 |
gtactaaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagca |
717716 |
T |
|
| Q |
177 |
gtcaaaa |
183 |
Q |
| |
|
| ||||| |
|
|
| T |
717715 |
gccaaaa |
717709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 712853 - 713031
Alignment:
| Q |
2 |
cttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgtttg |
101 |
Q |
| |
|
|||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| |||| || ||||| ||||| || |||||||||| |
|
|
| T |
712853 |
cttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcattacaaaagtactgaacaaaggagatgtgtttg |
712949 |
T |
|
| Q |
102 |
tgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaa |
183 |
Q |
| |
|
|||| || || || || ||||| ||||| ||||||| || ||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
712950 |
tgtttccaattggcctcattcactttcaattgaatgttgggtatggaaatgcagttgctattgctggacttagcagccaaaa |
713031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 35313548 - 35313728
Alignment:
| Q |
12 |
tggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgat |
111 |
Q |
| |
|
||||||| || ||||| ||||||||||| | |||||||||||||| || |||||||| ||||| ||| | ||||| |||||||| |||||||| || || |
|
|
| T |
35313548 |
tggaaggcacactttacgttggatttgtttcctcaaatcaagacaataaccgtctcttcaccaaagtattgaacaaaggtgatgtatttgtgtttccaat |
35313647 |
T |
|
| Q |
112 |
cggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagt |
192 |
Q |
| |
|
|||||| ||||| || || |||| || || ||||| | ||| |||| |||||||| ||||| || |||||||| ||||| |
|
|
| T |
35313648 |
cggtctcattcacttccaattgaacgttggttatggggaggctattgccattgctggtcttagtagccaaaaccctggagt |
35313728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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