View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11975_low_4 (Length: 724)

Name: NF11975_low_4
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11975_low_4
NF11975_low_4
[»] chr4 (1 HSPs)
chr4 (1-706)||(38402758-38403463)
[»] chr3 (1 HSPs)
chr3 (89-118)||(38762255-38762284)


Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Original strand, 38402758 - 38403463
Alignment:
Q  1 atttaaaatcagtaacaatatgctaacattcaatacaaatataaattaagagttaatttatatacacctttaatttatgtacacctttagtcaatcaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38402758 atttaaaatcagtaacaatatgctaacattcaatacaaatataaattaagagttaatttatatacacctttaatttatgtacacctttagtcaatcaatc 38402857  T
Q  101 ataattgtttaatcattagaaaagcttgactttcattatacctagcttaaataaaagtcatgcaaatgatggttggctgataatgtaaaacattttacac 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38402858 ataattgtttaatcattaaaaaagcttgactttcattatacctagcttaaataaaagtcatgcaaatgatggttggttgataatgtaaaacattttacac 38402957  T
Q  201 tgacagtacatcaaaattattctctacatatcattgtccttttgttccgtgaattttagtgacaaccatacacattcatgattgaatactgaaaatcact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38402958 tgacagtacatcaaaattattctctacatatcattgtccttttgttccgtgaattttagtgactaccatacacattcatgattgaatactgaaaatcact 38403057  T
Q  301 ctttacctgctctggagtaaaaatcactcccttctcataaaacgaatcataatttccaatctcaacctgccaatgccatataatgttaagaacaaatctt 400  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38403058 ctttacctgctctggagtaaaaatcactcccttctcataaaatgaatcataatttccaatctcaacctgccaatgccatataatattaagaacaaatctt 38403157  T
Q  401 gtaaggatgaattttaaatgtttatggttatcccatcttttgactagaatatgaacttggaactgatactagaaatggaactagacaaaaggtcaaacca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38403158 gtaaggatgaattttaaatgtttatggttatcccatcttttgactagaatatgaacttggaactgatactagaaatggaattagacaaaaggtcaaacca 38403257  T
Q  501 ttagtgctcctgcttcaactgcagctggaaatgttgcaggatctacagaagaaacacaaacctgcaacagcgatgaatcataaattgttgcctcttttaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38403258 ttagtgctcctgcttcaactgcagctggaaatgttgcaggatctacagaagaaacacaaacctgcaacagcgatgaatcataaattgttgcctcttttaa 38403357  T
Q  601 gagtattgtaaatgtacattgaaattagaatcaatatgcatgttcaataccaactttataaatgattaagatatcctctgattatagtaaattttgtaga 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38403358 gagtattgtaaatgtacattgaaattagaatcaatatgcatgttcaataccaactttataaatgattaagatatcctctgattatagtaaattttgtaga 38403457  T
Q  701 tgcaaa 706  Q
    ||||||    
T  38403458 tgcaaa 38403463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 38762284 - 38762255
Alignment:
Q  89 agtcaatcaatcataattgtttaatcatta 118  Q
    ||||||||||||||||||||||||||||||    
T  38762284 agtcaatcaatcataattgtttaatcatta 38762255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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