View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_6 (Length: 637)
Name: NF11975_low_6
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 4178482 - 4178839
Alignment:
| Q |
8 |
aagcagagaccaaaagtatgacaaaaa--ctttaaaactaaaagtcgaagaannnnnnnataagaattaaaatgaaatgtttgaatattttatagaggga |
105 |
Q |
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| T |
4178482 |
aagcaaagaccaaaagtatgacaaaaaaactttaaaactaaaagtcgaagaatttttttataagaattaaaatgaaaagtttgaatattttatagaggga |
4178581 |
T |
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| Q |
106 |
aaaaacatattaaaccataaactttatttgaatctaaacatgttggtctagtcaagtaaaggaatccaacttagtgaaaaagaaggatttgagtccaaac |
205 |
Q |
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| T |
4178582 |
aaaaacatattaaaccataaactttatttgaatctaaacatgttggtctagtcaagtaaaggaatccaacttagtgaaaaagaaggatttgagtccaaac |
4178681 |
T |
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| Q |
206 |
acaaattaatattacaagtttataatttgattataattattgacaatgatgggtctgaaactttaattgcttccactttcatgttgacagttttgcttaa |
305 |
Q |
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| T |
4178682 |
acaaattaatattacaagtttataatttgattattattatttacaatgatgggtctgaaactttaattgcttccactttcatgttgacagttttgcataa |
4178781 |
T |
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| Q |
306 |
tggtctgaagatgatcatgttccgtaaagagagatcttatcctcaattaagcaaattt |
363 |
Q |
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| T |
4178782 |
tggtctgaagatgatcatgttccgtaaagagagatcttatcctcaatcaagcaaattt |
4178839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 348 - 621
Target Start/End: Original strand, 4178853 - 4179126
Alignment:
| Q |
348 |
tcaattaagcaaatttcatcacgtggtttaccatattcatgcctagtaacgagttattctcatttgaactaggaaagttggctgttgcaaaacttaataa |
447 |
Q |
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| T |
4178853 |
tcaattaagcaaatttcatcacgtggtttaccatattcatgcctagtaacaagttattctcatttgaactaggaaagttggctgttgcaaaacttaataa |
4178952 |
T |
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| Q |
448 |
aattattctcatgaaaatgtgcataaccgccaaataannnnnnncttacgtaaactgtagtatttgatttgtttatttagaagtatgtaaaatatgtaat |
547 |
Q |
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| T |
4178953 |
aattattctcatgaaaatgtgcataaccgccaaatagtttttttcttacgtaaactgtagtattttatttgtttatttagaagtatgtaaaatatgtaat |
4179052 |
T |
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| Q |
548 |
gtaattttttcttcttataaatacttcccctgcagattgattaacttaatggatcatgtgcattgcaatgttgg |
621 |
Q |
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| T |
4179053 |
gtaattttttcttcttataaatacttcccctgcagattgattaacttaatggatcatgtgcattgcaatgttgg |
4179126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 4173635 - 4173691
Alignment:
| Q |
565 |
taaatacttcccctgcagattgattaacttaatggatcatgtgcattgcaatgttgg |
621 |
Q |
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| T |
4173635 |
taaatacttcccctgcagattgagtaatttaatggatcatgtgcattgcaatgttgg |
4173691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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