View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11975_low_7 (Length: 628)
Name: NF11975_low_7
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_7 |
 | |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 20 - 616
Target Start/End: Complemental strand, 23472384 - 23471789
Alignment:
| Q |
20 |
agcatatgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23472384 |
agcatatgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcctgagtcttttccatcaa |
23472285 |
T |
|
| Q |
120 |
acttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaatatgtttggatgtacttgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23472284 |
acttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaa-atgtttggatgtacttgt |
23472186 |
T |
|
| Q |
220 |
taactttatagaggtacaagaggaagtctaatgtcattcacaaaaatgcagcagagttagtatggcatgcttctgtttattcttaactaggttttgtttc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23472185 |
taactttatagaggtacaagaggaagtctaatgtcattcacaaaaatgcagcagagttagtatggcatgcttctgtttattcttaactaggttttgtttc |
23472086 |
T |
|
| Q |
320 |
tcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatccc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23472085 |
tcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatccc |
23471986 |
T |
|
| Q |
420 |
aaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttctatccctcgacttatt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
23471985 |
aaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatacatcttttctctccctcgacttatt |
23471886 |
T |
|
| Q |
520 |
gtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctctccgaaaccttaaactcgatggttgttcatctc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23471885 |
gtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctctccgaaaccttaaacttgatggttgttcatctc |
23471789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 584
Target Start/End: Complemental strand, 23439849 - 23439285
Alignment:
| Q |
20 |
agcatatgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23439849 |
agcatatgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtctttagtcttttccatcaa |
23439750 |
T |
|
| Q |
120 |
acttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaatatgtttggatgtacttgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23439749 |
acttttgtgctgaaatgcttgtagagcttagcatgactcatagcaagcttaaaaatctctgagatggagttcaggtacaaatatgtttggatatacttgt |
23439650 |
T |
|
| Q |
220 |
taactttatagaggtacaagaggaagtctaatgtcattcacaaaaatgcagcagagttagtatggcatgcttctgtttattcttaactaggttttgtttc |
319 |
Q |
| |
|
|||||||||| |||||||||||| ||||| || |||||||||| || ||||||| ||| ||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
23439649 |
taactttataaaggtacaagagg-agtctcgtgctattcacaaaattgtagcagagctaggatgacatgcctctatttattcttaactaggttttgtttc |
23439551 |
T |
|
| Q |
320 |
tcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgt-gaatctaatcacatttagccttaattactccaaagatctgattgagatcc |
418 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
23439550 |
tcttttaatcaacacttatgcatgtttatttcttgttacagaatcttgtaaaatctaatcacaatctgccttaattactccaaagatctgattgagatcc |
23439451 |
T |
|
| Q |
419 |
caaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttctatccctcgacttat |
518 |
Q |
| |
|
| |||||||||||||||||||||||| || || | ||||| | ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
23439450 |
ccgacttatctagggctacaaatcttggaagagcatctctctgtcaatgtgaaagcttgcgtcagctccatccatccatcttttctctccctcgacttac |
23439351 |
T |
|
| Q |
519 |
tgtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctct |
584 |
Q |
| |
|
| |||||||||||||||||||| | || |||||||||||||| || ||||||||||| ||||| |
|
|
| T |
23439350 |
atttctagatttaggaggttgcattactattgaaagccttaaaacgaacattcattcaaaatctct |
23439285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 306 - 616
Target Start/End: Complemental strand, 23351661 - 23351351
Alignment:
| Q |
306 |
ctaggttttgtttctcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagat |
405 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||| || ||| ||| | | |||||||||| |
|
|
| T |
23351661 |
ctaggttttgtttctcttttaatcaaaactcatgcatgtttatttcttattacagaatcttgtgaatctaagatcaattatgcttcaatcctccaaagat |
23351562 |
T |
|
| Q |
406 |
ctgattgagatcccaaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttcta |
505 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23351561 |
ctgattgagatcccagacttatctagggctacaaatcttgaaagagtatatctctgtcaatgtgaaagcctgcgtcagctccatccatccatcttttctc |
23351462 |
T |
|
| Q |
506 |
tccctcgacttattgtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctctccgaaaccttaaactcgatgg |
605 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||||||||| ||||||||||||||||| ||||||||||| ||||| | || |||||||||| ||| |
|
|
| T |
23351461 |
tccctcgacttatatttctagatttagaagattgcataaagattgaaagccttaaaaccaacattcattcaaaatctctttgtaaacttaaactcggtgg |
23351362 |
T |
|
| Q |
606 |
ttgttcatctc |
616 |
Q |
| |
|
|||||||||| |
|
|
| T |
23351361 |
ctgttcatctc |
23351351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 302 - 585
Target Start/End: Complemental strand, 23386003 - 23385720
Alignment:
| Q |
302 |
ttaactaggttttgtttctcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| | || | ||| | | |||||| |
|
|
| T |
23386003 |
ttaactaggttttgtttctcttttaatcaacactcatggatgtttatttcttgttacagaatcttgtgaatctaagagtactttggcttgaatcctccaa |
23385904 |
T |
|
| Q |
402 |
agatctgattgagatcccaaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttt |
501 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||| | | ||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23385903 |
agatctgattgagatcccagacttatctagggctataaatcttgacagaatacatctctcggaatgtgaaagcctgcgtcagctccatccatccatcttt |
23385804 |
T |
|
| Q |
502 |
tctatccctcgacttattgtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctctc |
585 |
Q |
| |
|
||| |||||||| |||| ||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
23385803 |
tctctccctcgaattatatatctagatttaagaggttgcataaagattgaaagccttaaatccaacattcattcaaaatctctc |
23385720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 23351878 - 23351699
Alignment:
| Q |
20 |
agcatatgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaa |
119 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
23351878 |
agcatatgcaatgtacacttacctgacggtctcgagtgtctttctgataaattgaggtaccttcaatgggatggatattgtcttgagtctttgccatcaa |
23351779 |
T |
|
| Q |
120 |
acttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaa |
199 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351778 |
ccttttgtgctgaaatgcttattgagcttcacatgactcattgcaagcttaaaaagctctgggatggagttcaggtacaa |
23351699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 302 - 584
Target Start/End: Complemental strand, 23404374 - 23404092
Alignment:
| Q |
302 |
ttaactaggttttgtttctcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||| || | ||| | | |||||| |
|
|
| T |
23404374 |
ttaactaggttttgtttctcttttaatcaacactcatggatgtttatttcttgttacagaatcttgtgaatctaagaacactttggcttgaatcctccaa |
23404275 |
T |
|
| Q |
402 |
agatctgattgagatcccaaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttt |
501 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
23404274 |
agatctgattgagatcccagacttatctagggctacaaatcttgctattgtacttctctcggaatgtgaaagcttgcgtcaactccatccatccatcttt |
23404175 |
T |
|
| Q |
502 |
tctatccctcgactt-attgtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctct |
584 |
Q |
| |
|
||| |||||| |||| | | | ||||| ||| |||||||||||| || |||||||||||||| || ||||||||||| ||||| |
|
|
| T |
23404174 |
tctctccctcaacttcaatat-ctagacttaagaggttgcataagtattgaaagccttaaaacaaacattcattcaaaatctct |
23404092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 302 - 584
Target Start/End: Complemental strand, 23462993 - 23462711
Alignment:
| Q |
302 |
ttaactaggttttgtttctcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||| || | ||| | |||||| |
|
|
| T |
23462993 |
ttaactaggttttgtttctcttttaatcaacactcatggatgtttatttcttgttacagaatcttgtgaatctaagaacactttggcttcgatcctccaa |
23462894 |
T |
|
| Q |
402 |
agatctgattgagatcccaaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttt |
501 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
23462893 |
agatctgattgagatcccagacttatctagggctacaaatcttgttgttgtacttctctcggaatgtgaaagcttgcgtcaactccatccatccatcttt |
23462794 |
T |
|
| Q |
502 |
tctatccctcgactt-attgtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctct |
584 |
Q |
| |
|
||| |||||| |||| | | | ||||| ||| |||||||||||| || |||||||||||||| || ||||||||||| ||||| |
|
|
| T |
23462793 |
tctctccctcaacttcaatat-ctagacttaagaggttgcataagtattgaaagccttaaaacaaacattcattcaaaatctct |
23462711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 25 - 252
Target Start/End: Complemental strand, 23478524 - 23478298
Alignment:
| Q |
25 |
atgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttt |
124 |
Q |
| |
|
||||||||| | ||||| |||||||| |||||| ||||||||||||||||||| |||| |||||| ||||| |||||||||| ||| ||||||| |||| |
|
|
| T |
23478524 |
atgcaatgtgtactttcccgatggtcttgagtggatttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtttttgccatcaaccttt |
23478425 |
T |
|
| Q |
125 |
tgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaatatgtttggatgtacttgttaact |
224 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| | |
|
|
| T |
23478424 |
tgtgctgaaatgctcatagagcttcacttgagtcatagcaagcttaaaaagctatgggatggagttcaggtacaaatgtgtttggatatacttgttaa-t |
23478326 |
T |
|
| Q |
225 |
ttatagaggtacaagaggaagtctaatg |
252 |
Q |
| |
|
|| | || ||| ||||||||||||||| |
|
|
| T |
23478325 |
tttttgaagtatgagaggaagtctaatg |
23478298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 38 - 252
Target Start/End: Complemental strand, 23447211 - 23446998
Alignment:
| Q |
38 |
tttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgc |
137 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||||||| |||| |||||| ||||| |||||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
23447211 |
tttcccgatggtcttgagtggatttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgc |
23447112 |
T |
|
| Q |
138 |
ttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaatatgtttggatgtacttgttaactttatagaggtaca |
237 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||| | || ||| |
|
|
| T |
23447111 |
tcatagagcttcacttgagtcatagcaagcttaaaaagctatgggatggagttcaggtacaaatgtgtttggatatacttgttaa-tttgttgaagtatg |
23447013 |
T |
|
| Q |
238 |
agaggaagtctaatg |
252 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23447012 |
agaggaagtctaatg |
23446998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 44 - 252
Target Start/End: Complemental strand, 23498984 - 23498777
Alignment:
| Q |
44 |
gatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgcttgtag |
143 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| |||| |||||| ||||| |||||||||| ||| ||||||| |||||||||||||||||| ||| |
|
|
| T |
23498984 |
gatggtcttgagtggatttctgataaattgaggtatcttcgatgggaaggatactgtcttgagtatttgccatcaaccttttgtgctgaaatgctcatag |
23498885 |
T |
|
| Q |
144 |
agcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaatatgtttggatgtacttgttaactttatagaggtacaagagga |
243 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| |||||||||| ||| | || ||| |||||| |
|
|
| T |
23498884 |
agcttcacttgagtcatagcaagcttaaaaagctatgggatggagttcaggtacaattctgtttggatatacttgttaa-tttgtcgaagtatgagagga |
23498786 |
T |
|
| Q |
244 |
agtctaatg |
252 |
Q |
| |
|
||||||||| |
|
|
| T |
23498785 |
agtctaatg |
23498777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 23453994 - 23453808
Alignment:
| Q |
25 |
atgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttt |
124 |
Q |
| |
|
||||||||| || ||||| || ||||| |||||||||||| |||||||||||| |||| ||||||||||| || ||||||||||| ||| ||| |||| |
|
|
| T |
23453994 |
atgcaatgtgcactttcccgacggtcttgagtggctttctaataaattgaggttccttatgtgggagggatactgccttgagtctttgccaccaaccttt |
23453895 |
T |
|
| Q |
125 |
tgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaatatgtttggat |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23453894 |
tgtgctgaaatgctcatagagcttcacatgggtcatagcaagcttaaaaagctctgggatggagttcaggtacaaatgtgtttggat |
23453808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 23404571 - 23404408
Alignment:
| Q |
38 |
tttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgc |
137 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||| |||| |||| | ||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
23404571 |
tttcctgacggtcttgagtggatttctgataaattgaggtatcttcgatggaaaagatattgtcttgagtctttgccatcaactttttgtgctgaaatgc |
23404472 |
T |
|
| Q |
138 |
ttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaat |
201 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23404471 |
ttgtagagctttgcatggctcaaagcaagcttaaaaagctctgggatggagttcaggtacaaat |
23404408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 23386200 - 23386037
Alignment:
| Q |
38 |
tttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgc |
137 |
Q |
| |
|
|||||||| ||||| |||||| |||| |||||||||||||| |||| |||| | |||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
23386200 |
tttcctgacggtcttgagtggatttcggataaattgaggtatcttcgatggaaaagatactgtcttgagtctttgccatcaaccttttgtgctgaaatgc |
23386101 |
T |
|
| Q |
138 |
ttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaat |
201 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23386100 |
ttgtagagctttgcatgaatcaaagcaagcttaaaaagctctgggatggagttcaggtacaaat |
23386037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 23463202 - 23463039
Alignment:
| Q |
38 |
tttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgc |
137 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||||||||||| |||| ||||| |||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
23463202 |
tttcctgacggtcttgagtggatttctgataaattgaggtatcttctatgggtaagatactgtcttgagtctttgccatcaaccttttgtgctgaaatgc |
23463103 |
T |
|
| Q |
138 |
ttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaat |
201 |
Q |
| |
|
||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23463102 |
ttgtatatctttgcatgagtcatagcaagcttaaaaagctctgggatggagttcaggtacaaat |
23463039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 344 - 584
Target Start/End: Complemental strand, 23478226 - 23477986
Alignment:
| Q |
344 |
tttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatcccaaacttatctagggctacaaatct |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | || | ||| | | ||||||| ||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
23478226 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaatct |
23478127 |
T |
|
| Q |
444 |
tgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttctatccctcgacttattgtactagatttaggaggttgcata |
543 |
Q |
| |
|
| | | |||| |||| | | |||||||||||||| |||| |||||| | || ||||||||| ||||| |||| ||||||||| ||||||||| | |
|
|
| T |
23478126 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttctatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
23478027 |
T |
|
| Q |
544 |
aagatcgaaagccttaaaaccaatattcattcaaattctct |
584 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23478026 |
aagattgaaagccttaaaaccaacattcattcaaaatctct |
23477986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 344 - 584
Target Start/End: Complemental strand, 23498675 - 23498435
Alignment:
| Q |
344 |
tttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatcccaaacttatctagggctacaaatct |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | || | ||| | | ||||||| ||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
23498675 |
tttatttcttgttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaatct |
23498576 |
T |
|
| Q |
444 |
tgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttctatccctcgacttattgtactagatttaggaggttgcata |
543 |
Q |
| |
|
| | | |||| |||| | | |||||||||||||| |||| |||||| | || ||||||||| ||||| |||| ||||||||| ||||||||| | |
|
|
| T |
23498575 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccattcttcgatcttttctctccctgatcttagatatctagatttacgaggttgcaaa |
23498476 |
T |
|
| Q |
544 |
aagatcgaaagccttaaaaccaatattcattcaaattctct |
584 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23498475 |
aagattgaaagccttaaaaccaacattcattcaaaatctct |
23498435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 344 - 584
Target Start/End: Complemental strand, 23446926 - 23446686
Alignment:
| Q |
344 |
tttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatcccaaacttatctagggctacaaatct |
443 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || | || | ||| | | ||||||| ||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
23446926 |
tttatttctttttacagaatcttgtgaatctaaacatactttggcttgaatcctccaaaaatctgattgagatcccagacttatctaaggctacaaatct |
23446827 |
T |
|
| Q |
444 |
tgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttctatccctcgacttattgtactagatttaggaggttgcata |
543 |
Q |
| |
|
| | | |||| |||| | | |||||||||||||| |||| |||||||| |||||||||||| ||||| |||| ||||||||| ||| |||| | |
|
|
| T |
23446826 |
tcatagagtatatctttttcaatgtgaaagcctgggtcagctccatccttccatcttttctctccctgatcttagatatctagatttacgagactgcaaa |
23446727 |
T |
|
| Q |
544 |
aagatcgaaagccttaaaaccaatattcattcaaattctct |
584 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23446726 |
aagattgaaagccttaaaaccaacattcattcaaaatctct |
23446686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 23468478 - 23468335
Alignment:
| Q |
20 |
agcatatgcaatgtacattttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaa |
119 |
Q |
| |
|
|||| ||||||||| | ||||| |||||||| |||||| |||||||||||||||||||||||| |||||| ||||| |||||||| ||||| ||||||| |
|
|
| T |
23468478 |
agcacatgcaatgtgtactttcccgatggtcttgagtggatttctgataaattgaggtaccttcgatgggatggatactgtcttgaatctttgccatcaa |
23468379 |
T |
|
| Q |
120 |
acttttgtgctgaaatgcttgtagagcttcacatgactcatagc |
163 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
23468378 |
ccttttgtgctgaaatgcttgtagagatttgcatgagtcatagc |
23468335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 340 - 584
Target Start/End: Complemental strand, 23453702 - 23453462
Alignment:
| Q |
340 |
catgtttatttcttgttacagaatcttgtgaatctaatcacatttagccttaattactccaaagatctgattgagatcccaaacttatctagggctacaa |
439 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || | | | ||| | | ||||||||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
23453702 |
catgtttatttattgttacagaatcttgtgaatctaaacatactccggcttgaatcctccaaagatctgattgagatcccagacttatctaaggatacaa |
23453603 |
T |
|
| Q |
440 |
atcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttctatccctcgacttattgtactagatttaggaggttg |
539 |
Q |
| |
|
||||| | ||| | || |||||||||||||| |||| |||||||| |||||||| | | ||||| |||| ||||||||| ||||||| |
|
|
| T |
23453602 |
atcttcatggagtgtttttc----aatgtgaaagcctgtgtcagctccatccttccatcttctgtctccctgatcttagatatctagatttacgaggttg |
23453507 |
T |
|
| Q |
540 |
cataaagatcgaaagccttaaaaccaatattcattcaaattctct |
584 |
Q |
| |
|
|| |||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23453506 |
caaaaagattgaaagccttaaaaccaacattcattcaaaatctct |
23453462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 36002439 - 36002285
Alignment:
| Q |
47 |
ggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgcttgtagagc |
146 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||| ||||||| || ||| | ||||| ||| ||| ||| |||||||||| |||||| | | |
|
|
| T |
36002439 |
ggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgctgaaaatcttgtacaac |
36002340 |
T |
|
| Q |
147 |
ttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaat |
201 |
Q |
| |
|
|| |||||| ||||||| ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
36002339 |
ttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaat |
36002285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 35769696 - 35769830
Alignment:
| Q |
62 |
tctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgcttgtagagcttcacatgactcata |
161 |
Q |
| |
|
||||| ||||||||||||||| | ||| | |||| ||||| ||||||| |||| ||| || |||| | |||||||||||||| |||| || ||| |
|
|
| T |
35769696 |
tctgacaaattgaggtaccttgagtggcatagatactgtctgaagtctttgccattaaaattcgatgctaacttgcttgtagagctttgcatgccttata |
35769795 |
T |
|
| Q |
162 |
gcaagcttaaaaagctctgggatggagttcaggta |
196 |
Q |
| |
|
|||| ||| ||||||| ||||| |||||||||||| |
|
|
| T |
35769796 |
gcaaccttcaaaagctttgggacggagttcaggta |
35769830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 36023431 - 36023390
Alignment:
| Q |
160 |
tagcaagcttaaaaagctctgggatggagttcaggtacaaat |
201 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
36023431 |
tagcaagctaaaaaagctttgggatggaattcaggtacaaat |
36023390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 23351706 - 23351662
Alignment:
| Q |
231 |
aggtacaagaggaagtctaatgtcattcacaaaaatgcagcagag |
275 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| |||| |
|
|
| T |
23351706 |
aggtacaagaggaagtctaatgctattcacaaaattgcagtagag |
23351662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 11384 - 11169
Alignment:
| Q |
20 |
agcatatgcaatgtac---attttcctgatggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccat |
116 |
Q |
| |
|
|||||||||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||||||| |||| |
|
|
| T |
11384 |
agcatatgcaatgtactgcacttccctgacggtctcgagtggctttctgataaattgaggtaccttcattgggaaagatactctcttgagtctttgccat |
11285 |
T |
|
| Q |
117 |
caaacttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaatatgtttggatgtact |
216 |
Q |
| |
|
||| ||||| |||| ||||||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
11284 |
caaccttttctgctaaaatgctcgtagagcttcaattgcgtcatagcaagcttaaaaagctctgggaaggagttcaggtaaaaatatgtttggatatact |
11185 |
T |
|
| Q |
217 |
tgttaactttatagag |
232 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11184 |
tgttaactttatagag |
11169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 315 - 616
Target Start/End: Complemental strand, 11125 - 10824
Alignment:
| Q |
315 |
gtttctcttttaatcgacactaatgcatgtttatttcttgttacagaatcttgtgaatctaatcacatttagc-cttaattactccaaagatctgattga |
413 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||| || | | | ||| |||| |||||||| ||||| |
|
|
| T |
11125 |
gtttctcttttaatcaacactcatgcttgtttatttcttgttacaggatcttgtgaatctaa-cagttctttcgcttccaaactctaaagatctcattga |
11027 |
T |
|
| Q |
414 |
gatcccaaacttatctagggctacaaatcttgaaaaagtacatctctataaatgtgaaagcctgcgtcatctccatccatccatcttttctatccctcga |
513 |
Q |
| |
|
| || || ||||||| ||||||||||||||| ||| || ||||| | ||||| ||||||||||||| |||||| |||||||| ||||| |||||||| |
|
|
| T |
11026 |
gctctcagacttatccagggctacaaatcttcaaagtctatatctcactcaatgtaaaagcctgcgtcagctccatacatccatcctttctctccctcga |
10927 |
T |
|
| Q |
514 |
ctt-attgtactagatttaggaggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctctccgaaaccttaaactcgatggttgttca |
612 |
Q |
| |
|
||| ||| | ||||||||| ||||||||||||| || |||||||||||| || | ||||||||||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
10926 |
cttgattat-ctagatttacgaggttgcataaatattgaaagccttaaagccgagattcattcaaaatctctccgtgtacttttactcaatggttgttca |
10828 |
T |
|
| Q |
613 |
tctc |
616 |
Q |
| |
|
|||| |
|
|
| T |
10827 |
tctc |
10824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 16121578 - 16121424
Alignment:
| Q |
47 |
ggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgcttgtagagc |
146 |
Q |
| |
|
||||| |||||| | |||||||||||||| |||||||| ||||| || | ||||||||||| ||||||| ||||||| || ||| ||||||||| | |
|
|
| T |
16121578 |
ggtcttgagtggttgtctgataaattgagctaccttcattgggaatcatttccacttgagtctttgccatcaaccttttgtcctcaaaagcttgtagaac |
16121479 |
T |
|
| Q |
147 |
ttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaat |
201 |
Q |
| |
|
|| |||||| ||||||||||||| |||||| |||||| || ||||||||||||| |
|
|
| T |
16121478 |
ttagcatgacccatagcaagcttagaaagctttgggatagaattcaggtacaaat |
16121424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 16337590 - 16337744
Alignment:
| Q |
47 |
ggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtcttgagtcttttccatcaaacttttgtgctgaaatgcttgtagagc |
146 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||| ||||| || | ||||| ||||| ||||||| |||||||||| ||| |||||| | | |
|
|
| T |
16337590 |
ggtcttgagtggttgtctgataaattgaggtaccttcattgggaatcatttccacttgaatctttgccatcaaccttttgtgctcaaaaccttgtacaac |
16337689 |
T |
|
| Q |
147 |
ttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaat |
201 |
Q |
| |
|
|| |||||| ||||||||||||| |||||| |||||| || ||||||||||||| |
|
|
| T |
16337690 |
ttagcatgacccatagcaagcttagaaagctttgggatagaattcaggtacaaat |
16337744 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 12897144 - 12897241
Alignment:
| Q |
101 |
cttgagtcttttccatcaaacttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtaca |
198 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||| ||||||| | ||| |||| |||||||||||||||||||| ||| ||| | |||||||||| |
|
|
| T |
12897144 |
cttgagtctttgccatcaaccttttgtgccgaatggcttgtacaacttagcatgcgccatagcaagcttaaaaagctttggaatgaaattcaggtaca |
12897241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 589
Target Start/End: Original strand, 12897553 - 12897608
Alignment:
| Q |
534 |
aggttgcataaagatcgaaagccttaaaaccaatattcattcaaattctctccgaa |
589 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| || ||||||||||| |||||||||| |
|
|
| T |
12897553 |
aggttgcaaaaagattgaaagcctgaaaactaacattcattcaaaatctctccgaa |
12897608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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