View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11975_low_8 (Length: 619)
Name: NF11975_low_8
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 3607174 - 3607598
Alignment:
| Q |
1 |
gcgttaaataaaacccagttctaatcatctnnnnnnnnccatttagaatgaaaagaaaagtaataactgaaaatatacaaggacagtaagggaagaagcc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3607174 |
gcgttaaataaaacccagttctaatcatctaaaaaaaaccatttagaatgaaaagaaaagtaataactgaaaatatacaaggacagtaagggaagaagcc |
3607273 |
T |
|
| Q |
101 |
agccac-acacaggcaaaatcgatttacactgtcgcagaagctactattcctagcttctattggaatccgattttaaaag----aattgatttttcaaaa |
195 |
Q |
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|||| | ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3607274 |
agcccccacacaggcaaaatcgatttacactgccgcagaagctactattcctaacttctattggaatccgattttaaaagccagaattgatttttcaaaa |
3607373 |
T |
|
| Q |
196 |
aacacccgaacaaatatttggtaaagcaaactcacttttacacttgcaaacgtacgtctaccataacgtgcaaccaaacagccacttcattgcaaacgtt |
295 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3607374 |
aacacccaaacaaatatttggtaaagcaaactcacttttacacttgcaaacgtacgtctaccataacgtgcaaccaaacggccacttcattgcaaacgtt |
3607473 |
T |
|
| Q |
296 |
ccatattgttaaacgcacgtcacaataatagacacagtagaaataaggtatatgattacaaacttataaacaaggaatatgattagaaacttcatgctct |
395 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3607474 |
ccatattgttaaacgcacgtcacaataatagacacggtagaaatagggtatatgattacaaacttataaacaaggaatatgattagaaacttcatgctct |
3607573 |
T |
|
| Q |
396 |
catgtcacgtagctatagagttacg |
420 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
3607574 |
catatcacgtagctatagagttacg |
3607598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 477 - 619
Target Start/End: Original strand, 3607655 - 3607797
Alignment:
| Q |
477 |
ttatgtgatggttgaattgtatcaaatagtcacttcactataaagaatcatataggtacaaattcacaaacaacttaaaaaattcacaaacaatcgtaac |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3607655 |
ttatgtgatggttgaattgtatcaaatagtcacttcactataaagaatcatataggtacaaattcacaagcaacttaaaaaattcacaaacaatcgtaac |
3607754 |
T |
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| Q |
577 |
caaatgttagaagaaggagaagagattgaataatgtggtgaac |
619 |
Q |
| |
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| T |
3607755 |
caaatgttagaagaaggagaagagattgaataatgtggtgaac |
3607797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 7766371 - 7766264
Alignment:
| Q |
180 |
aattgatttttcaaaaaacacccgaacaaatatttggtaaagcaaactcacttttacacttgcaaacgtacgtctacca-----taacgtgcaaccaaac |
274 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| |||||| |||||||||||| | ||||||||||||||||||||| ||||| |||||||||| |
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| T |
7766371 |
aattgatttttcaaaaaacacccaaacacatatttagtaaagaaaactcacttttccccttgcaaacgtacgtctaccacattgtaacgggcaaccaaac |
7766272 |
T |
|
| Q |
275 |
agccactt |
282 |
Q |
| |
|
|||||||| |
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|
| T |
7766271 |
agccactt |
7766264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 37037262 - 37037314
Alignment:
| Q |
114 |
caaaatcgatttacactgtcgcagaagctactattcctagcttctattggaat |
166 |
Q |
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|||||||||||||||| |||| ||||| ||||||| ||||||| |||||||| |
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| T |
37037262 |
caaaatcgatttacaccgtcgtagaagttactatttgtagcttcaattggaat |
37037314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 37117386 - 37117503
Alignment:
| Q |
45 |
agaatgaaaagaaaagtaataactgaaaatatacaaggacagtaagggaagaagccagccacacacaggcaaaatcgatttacactgtcgcagaagctac |
144 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||||| |||| || || |||||| || ||||| ||||| |||||||| | ||| ||||||| |
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| T |
37117386 |
agaatcaaaagaaaagtaataaccgaaaatatacaaggatagtagggaaaaaagccaaccccacac-----aaatcaatttacaccgctgcataagctac |
37117480 |
T |
|
| Q |
145 |
tattcctagcttctattggaatc |
167 |
Q |
| |
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||||| | ||||||||||||||| |
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|
| T |
37117481 |
tattcttggcttctattggaatc |
37117503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 20672870 - 20672818
Alignment:
| Q |
114 |
caaaatcgatttacactgtcgcagaagctactattcctagcttctattggaat |
166 |
Q |
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|||||||||||||||| |||| ||||||||||||| ||||||| |||||||| |
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| T |
20672870 |
caaaatcgatttacaccgtcgtagaagctactatttgtagcttcaattggaat |
20672818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 45424236 - 45424273
Alignment:
| Q |
60 |
gtaataactgaaaatatacaaggacagtaagggaagaa |
97 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
45424236 |
gtaataaccgaaaatatacaaggacagtaggggaagaa |
45424273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 8384848 - 8384896
Alignment:
| Q |
114 |
caaaatcgatttacactgtcgcagaagctactattcctagcttctattg |
162 |
Q |
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||||||| ||||||||||||| ||||||||||||| ||||||| |||| |
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| T |
8384848 |
caaaatcaatttacactgtcgtagaagctactatttgtagcttcaattg |
8384896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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