View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11975_low_9 (Length: 572)
Name: NF11975_low_9
Description: NF11975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11975_low_9 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 16 - 560
Target Start/End: Original strand, 1607349 - 1607895
Alignment:
| Q |
16 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607349 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatt |
1607448 |
T |
|
| Q |
116 |
tggaaatgacccttcttctggttctgcaagtgacggatccaaannnnnnnattagtatgactatatatat--tcatataaaaagtacataagcgatagtg |
213 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1607449 |
tggaaatgacccttcttctgtttctgcaagtgacgaatccagaaattttgattagtatgactatatatatattcatataaaaagtacataagcgatagtg |
1607548 |
T |
|
| Q |
214 |
ttatgacatcaatattatcatatgaatcaaatgtaaagctggggattacaaaattttaacannnnnnnnacgaaaaaattaaaacattatatacctaaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
1607549 |
ttatgacatcaatattatcatatgaatcaaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaaa |
1607648 |
T |
|
| Q |
314 |
tattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaaccctatcatattta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607649 |
tattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaaccctatcatattta |
1607748 |
T |
|
| Q |
414 |
tattactctatgtatttgacaaaataaacattccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagcagtacaatac |
513 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1607749 |
tattactctatgtatgtcacaaaataaacattccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagcagcacaatac |
1607848 |
T |
|
| Q |
514 |
ttaaattttaaatagaaaaatataaaatcattgttagtacctttgct |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607849 |
ttaaattttaaatagaaaaatataaaatcattgttagtacctttgct |
1607895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Original strand, 1630345 - 1630852
Alignment:
| Q |
16 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630345 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatt |
1630444 |
T |
|
| Q |
116 |
tggaaatgacccttcttctggttctgcaagtgacggatccaaannnnnnnattagtatgactatatatattcatataaaaagtacataagcgatagtgtt |
215 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
1630445 |
tgaaaatgacccttcttctgtttctgcaagtgacgaatccaaaatttttgattagtatgactatatatattcatataaaa-gtacataagcgatagtgct |
1630543 |
T |
|
| Q |
216 |
atgacatcaatattatcatatgaatcaaatgtaaagctggggattacaaaattttaacannnnnnnnacgaaaaaattaaaacattatatacctaaaata |
315 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
1630544 |
atgacttcaatattattatatgaatcaaatgtaaatctggagattacaaaattttaacattttttttaggaaaaaattaaaacattatatacctaaaata |
1630643 |
T |
|
| Q |
316 |
ttgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaaccctatcatatttata |
415 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630644 |
ttgaatatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttata |
1630743 |
T |
|
| Q |
416 |
ttactctatgtatttgacaaaataaacattccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagcagtacaatactt |
515 |
Q |
| |
|
||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1630744 |
ttactctatgtatgtcacaaaataaacactcaataatttatctttcatttaattcttcctgaataaagttattgaataaccttttagcagtacaatactt |
1630843 |
T |
|
| Q |
516 |
aaattttaa |
524 |
Q |
| |
|
||||||||| |
|
|
| T |
1630844 |
aaattttaa |
1630852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 558
Target Start/End: Original strand, 1624370 - 1624900
Alignment:
| Q |
16 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatt |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624370 |
cagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatt |
1624469 |
T |
|
| Q |
116 |
tggaaatgacccttcttctggttctgcaagtgacggatccaaannnnnnnattagtatgactatatatattcatataaaaagtacataagcgatagtgtt |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
1624470 |
tggaaatgacccttcttctgtttctgcaagtgacggatccagaaattttgattagtatgactatatata---------aaagtacataagccatagtgtt |
1624560 |
T |
|
| Q |
216 |
atgacatcaatattatcatatgaatcaaatgtaaagctggggattacaaaattttaacannnnnnnnacgaaaaaattaaaacattatatacctaaaata |
315 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
1624561 |
atgacatcaatattatcatatgaattaaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaaata |
1624660 |
T |
|
| Q |
316 |
ttgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaaccctatcatatttata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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|
| T |
1624661 |
ttgaagatacttgaacatctacaaattataattgctct--gtgtcttcttattttaaaattcatttttatatacccatttttaaccctatcatatttata |
1624758 |
T |
|
| Q |
416 |
ttactctatgtatttgacaaaataaacattccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagcagtacaatactt |
515 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1624759 |
ttactctatgtatgtcacaaaataaacattcaataatttatctttcatttaattcttcctaaataaagttattgaataattttttagcagtacaatactt |
1624858 |
T |
|
| Q |
516 |
aaattttaaatagaaaaatataaaatcattgttagtacctttg |
558 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
1624859 |
-aattttaaatagaaaaaaataaaatcattgttaatacctttg |
1624900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 10819934 - 10819711
Alignment:
| Q |
16 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10819934 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatt |
10819835 |
T |
|
| Q |
116 |
tggaaatgacccttc------ttctggttctgcaagtgacggatccaaannnnnnnattagtatgactatatatattcatataaaaagtacataagcgat |
209 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10819834 |
tggaagtgacccttcttctatttctgtttctgcaa-tgacggatccagaaatttagattagtatgactatatatatttatataaaaagtacataagcgat |
10819736 |
T |
|
| Q |
210 |
agtgttatgacatcaatattatcat |
234 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10819735 |
agtgttatgacatcaatattatcat |
10819711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 285 - 399
Target Start/End: Complemental strand, 10819635 - 10819521
Alignment:
| Q |
285 |
gaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcattttta |
384 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
10819635 |
gaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
10819536 |
T |
|
| Q |
385 |
tcttcccattttcaa |
399 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
10819535 |
gcttcccgttttcaa |
10819521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 292 - 386
Target Start/End: Original strand, 1602996 - 1603086
Alignment:
| Q |
292 |
ttaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatc |
386 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattgc----tgtgtcttcatattttaaaattattttttatc |
1603086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 515 - 560
Target Start/End: Original strand, 1631340 - 1631385
Alignment:
| Q |
515 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgct |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgct |
1631385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 555
Target Start/End: Complemental strand, 10819227 - 10819162
Alignment:
| Q |
489 |
gaataactttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacct |
555 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
10819227 |
gaataattttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagtacct |
10819162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 18785396 - 18785528
Alignment:
| Q |
16 |
cagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18785396 |
cagtcttgtactgtccagaaccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagcttcctttcatgcatagaaaaccaatt |
18785495 |
T |
|
| Q |
116 |
tggaaatgacccttcttctggttctgcaagtga |
148 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
18785496 |
tggaaatgacccttcttctgtttctgcaagtga |
18785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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