View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11976_high_11 (Length: 422)
Name: NF11976_high_11
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 45514684 - 45515088
Alignment:
| Q |
1 |
cagttgatatattcaccaaacacatcaaattgcattcgtttatgaagttaagacaatcctttggcatttgtatttctctagtactctagtaaaagatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514684 |
cagttgatatattcaccaaacacatcaaattgcattcgtttatgaagttaagacaatcctttggcatttgtatttctctagtactctagtaaaagatgta |
45514783 |
T |
|
| Q |
101 |
ttttttctgcctannnnnnnctcatgttgttttgtaacagtaacttcggaaaaatgtaacataaccaacactctacatatgtaaaccatagtgatacatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514784 |
ttttttctgcctatttttttctcatgttgttttgtaacagtaacttcggaaaaatgtaacataaccaacactctacatatgtaaaccatagtgatacatg |
45514883 |
T |
|
| Q |
201 |
tatgaatggttatattttcttatttgaaatgtaacattcaattagacaaataatgtcaacaaattattggccattttggcttataataacaacgatgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45514884 |
tatgaatggttatattttcttatttgaaatgtaacattcaattagacaaataatgtcaacaaattattggccattttggcttataataacaacgatgaaa |
45514983 |
T |
|
| Q |
301 |
ataaagctttaacagaattttattgtcgggacaatgctgtagccctctctgttgaacgagccaacnnnnnnnnttcagacaaaccaatgtatcctttatt |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45514984 |
ataaagctttaacagaattttattgccgggacaatgttgtagccctctctgttgaacgagccaacaaaaaaaattcagacaaaccaatgtatcctttatt |
45515083 |
T |
|
| Q |
401 |
gatat |
405 |
Q |
| |
|
||||| |
|
|
| T |
45515084 |
gatat |
45515088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University