View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_high_13 (Length: 357)
Name: NF11976_high_13
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 2626783 - 2627139
Alignment:
| Q |
1 |
acacaaacttgtgcatcaagctattgaaatagtagcagattagaggtataaatcatgtattttcttgcagtacaaataaaggtagtcaagcatgtatagt |
100 |
Q |
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| T |
2626783 |
acacaaacttgtgcatcaagctattgaaatagtagcagattagaggtataaatcatgtattttcttgtagtacaaataaaggtagtcaagcatgtatagt |
2626882 |
T |
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| Q |
101 |
agattcaggtgcaaccgatcatattttcatataactgaattggtttgattctattcttaactgattttgatatcaaccttatgtctattagacttgagct |
200 |
Q |
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| T |
2626883 |
agattcaggtgcaaccgatcacattttcacataactgaattggtttgattctattcttaactgattttgatatcaaccttatgtctattagacttgagct |
2626982 |
T |
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| Q |
201 |
tcttactcggattctgcctttatgtgtttagaaagtcaataattacctaaagtcttttaccttctgtttggatgaatgttgcacttcaacgatgttcaga |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626983 |
tcttactcggattctgcctttatgtgtttagaatgtcaataattacctaaagtcttttaccttctgtttggatgaatgttgcacttcaacgatgttcaga |
2627082 |
T |
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| Q |
301 |
atttagaactacattcttccttttatttaggctctgttggggtaaataagttaatga |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2627083 |
atttagaactacattcttccttttatttaggctctgttggggtaaacaagttaatga |
2627139 |
T |
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