View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11976_high_20 (Length: 283)
Name: NF11976_high_20
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 21122515 - 21122262
Alignment:
| Q |
18 |
attatagagatgcgatcatcctcaagtgccttcaagagttgatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatactgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21122515 |
attatagagatgcgatcatcctcaagtgccttcaagagtttatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatacagaa |
21122416 |
T |
|
| Q |
118 |
tacctggtagtggagcaagatgagaaaatggttcaatatctttgcttttgcctttgaacctccccattgcgtctatcttctgcaccatttgtttgcacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21122415 |
tacctggtagtggagcaagatgagaaaatggttcgatatctttgcttttgcctttgaacctccccattgcgtctatcttctgcaccatttgtttgcacaa |
21122316 |
T |
|
| Q |
218 |
aagatatcgtccacacgttggaaaccatccttggaagcaattgttgtctgtctc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21122315 |
aagatatcgtccacacgttggaaaccatccttggaagcaattgttgtctgtctc |
21122262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 21115088 - 21114833
Alignment:
| Q |
18 |
attatagagatgcgatcatcctcaagtgccttcaagagttgatcataagccacttttgttgattcaaaatagatgaagtcttcggatgactgatactgaa |
117 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
21115088 |
attatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgattcaaaataaatgaattcttcaaatgaccgatacctgc |
21114989 |
T |
|
| Q |
118 |
tacctggtagtggagcaagatgagaaaatggttcaatatctttgcttttgcctttgaacctccccattgcgtctatcttctgcaccatttgtttgcacaa |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||| | ||||||| || |||||||| || |||||||| |||||||| |
|
|
| T |
21114988 |
tacctggtagtggagcacgatgagaaaatggttgaatatcaatgcttttacctttgtatttccccatcgcatctatcttttgtaccatttgcttgcacaa |
21114889 |
T |
|
| Q |
218 |
aagatatcgtccacacgttggaaaccatccttggaagcaattgttgtctgtctctg |
273 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
21114888 |
aagataccgtccacacgttggaaaccatccttgaaagcaattggcgtctgtttctg |
21114833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University