View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_high_27 (Length: 240)
Name: NF11976_high_27
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1543780 - 1543995
Alignment:
| Q |
1 |
agtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgccc |
100 |
Q |
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| T |
1543780 |
agtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgccc |
1543879 |
T |
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| Q |
101 |
ctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcctcccaacagtggatatcgtgc |
200 |
Q |
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| T |
1543880 |
ctccaaatcaaggtggatacgctcctccaaatgcaggtggtggataccctccccacaacatgagtggacctcctcctcctcccaacagtggatatcgtgc |
1543979 |
T |
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| Q |
201 |
tcctcaaaataactac |
216 |
Q |
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| T |
1543980 |
tcctcaaaataactac |
1543995 |
T |
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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 32421641 - 32421730
Alignment:
| Q |
91 |
ggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcct |
180 |
Q |
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| T |
32421641 |
ggatacgcccctccaaatcaaggtggatatgctcctccaaatgcaggtggtggataccctccccccaacatgagcggaccccctcctcct |
32421730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 32421524 - 32421610
Alignment:
| Q |
46 |
taccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
132 |
Q |
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| T |
32421524 |
taccctcccaacaatgctggcggataccctcctaacaatcaagctggatactcccctccaaatcaatctggatactcccctccaaat |
32421610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 32421743 - 32421790
Alignment:
| Q |
172 |
cctcctcctcccaacagtggatatcgtgctcctcaaaataactacctg |
219 |
Q |
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| T |
32421743 |
cctcctcctcccaacagtggatacggtgctcctcaaaataactacctg |
32421790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32421449 - 32421490
Alignment:
| Q |
1 |
agtaggcctccagtgcagaattctggtccacctccaaacaat |
42 |
Q |
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| T |
32421449 |
agtaggcctccagtgcagaattctggtccacctcccaacaat |
32421490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 32421611 - 32421658
Alignment:
| Q |
85 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
132 |
Q |
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| T |
32421611 |
caagctggatacgcccctccaaatcaaggcggatacgcccctccaaat |
32421658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 32425686 - 32425738
Alignment:
| Q |
85 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
137 |
Q |
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| T |
32425686 |
caagctggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcagg |
32425738 |
T |
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