View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11976_high_3 (Length: 751)

Name: NF11976_high_3
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11976_high_3
NF11976_high_3
[»] chr4 (6 HSPs)
chr4 (13-334)||(2627590-2627914)
chr4 (367-657)||(2627288-2627584)
chr4 (663-751)||(2627151-2627239)
chr4 (414-466)||(2557924-2557976)
chr4 (80-185)||(2553486-2553591)
chr4 (663-712)||(13949908-13949957)
[»] chr8 (2 HSPs)
chr8 (336-471)||(39537878-39538017)
chr8 (668-722)||(6509372-6509426)
[»] chr6 (1 HSPs)
chr6 (673-707)||(22691594-22691628)
[»] chr7 (1 HSPs)
chr7 (673-710)||(46825057-46825094)
[»] chr2 (1 HSPs)
chr2 (663-704)||(11513863-11513904)
[»] chr1 (1 HSPs)
chr1 (663-704)||(30371113-30371154)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 2627914 - 2627590
Alignment:
Q  13 catagggggttgatgttacacagaaaacctcatcgtagctcccattttctaggacgaccttttattctttctggatgttgaataacaatccttcaatttt 112  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2627914 catagggggttgatgttacacagaaaacctcatggtagctccaattttctacgacgaccttttattctttctggatgttgaataacattccttcaatttt 2627815  T
Q  113 gttctc---taatttatgtgatatgccttcaaaattgctgaagttgtgtagccattagtctcaagagaaactgaattactcttgctggcatataacaaga 209  Q
    ||||||   ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  2627814 gttctctaataattcatgtgatatgccttcaaaattgctgaagttgtgtaggcattagtctcaagagaaactgaattact-ttgctagcatataacaaga 2627716  T
Q  210 aat-tcatatttgagcagcagaccaaaaattttggttggagaagctcatggcatacattattgctgaaataattggacttcnnnnnnngtcttcgaaacg 308  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  2627715 aatatcatatttgagcagcagaccaaaaattttgtttggagaagctcatggcatacattattgctgaaataattggacttcaaaaaaagtcttcgaaacg 2627616  T
Q  309 ttagtgatacatttaatcacaacaaa 334  Q
    ||||||||||||||||||||||||||    
T  2627615 ttagtgatacatttaatcacaacaaa 2627590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 367 - 657
Target Start/End: Complemental strand, 2627584 - 2627288
Alignment:
Q  367 atgtttaggaacttattttctcatttaatctagtagtcactacatttcattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaa 466  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2627584 atgtttaggaacttattttctcatttaatctagtagtcacaacatttcattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaa 2627485  T
Q  467 atatgacttaactatnnnnnnnt--tacctgtttaatacctcctaagaaatgagtaagttgggaaattgctatttcctatgcagaattctttgataggcc 564  Q
    |||||||||||||||          ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  2627484 atatgacttaactataaaaaaaaagtacttgtttaatacatcctaagaaatgagtaagttgggaaattgctatttgctatgcagaattctttgataggca 2627385  T
Q  565 ttgaccccctatta----gttgatgcttgaaggcctactttgatcagcttatttactgaaataagtacttggtagagtgtttagaagaggttatgga 657  Q
    ||||||||||||||    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2627384 ttgaccccctattaattagttgatgcttaaaggcctattttgatcagcttatttactgaaataagtacttggtagagtgtttagaagaggttatgga 2627288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 663 - 751
Target Start/End: Complemental strand, 2627239 - 2627151
Alignment:
Q  663 acttttagcgtatatgaaaacaatttgaatttattttatcttgttttagatataaattatataacacacttatataacacgcgcttata 751  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  2627239 acttttagcatatatgaaaacaatttgaatttattttatcttgttttagatataaattatataacacacttatataaaaagcgcttata 2627151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 2557924 - 2557976
Alignment:
Q  414 cattaaaaattaaccaaattttaaccttcaaaatttgaagttagtagaaccaa 466  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||||||||||||    
T  2557924 cattaaaaactaaccaaattttaacattcaaaacttaaagttagtagaaccaa 2557976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 2553486 - 2553591
Alignment:
Q  80 tttctggatgttgaataacaatccttcaattttgttctctaatttatgtgatatgccttcaaaattgctgaagttgtgtagccattagtctcaagagaaa 179  Q
    |||||||||||||||||||| |||||| |||| |||||  | |||||||||| || |||| |   | | ||||||| |||||||||||||| | ||||||    
T  2553486 tttctggatgttgaataacactccttctatttcgttctaaagtttatgtgatttggcttctaggatacagaagttgcgtagccattagtcttatgagaaa 2553585  T
Q  180 ctgaat 185  Q
     |||||    
T  2553586 ttgaat 2553591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 712
Target Start/End: Original strand, 13949908 - 13949957
Alignment:
Q  663 acttttagcgtatatgaaaacaatttgaatttattttatcttgttttaga 712  Q
    |||| |||| |||||||||||||||||| |||||||||||||||| ||||    
T  13949908 acttatagcttatatgaaaacaatttgactttattttatcttgttataga 13949957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 336 - 471
Target Start/End: Complemental strand, 39538017 - 39537878
Alignment:
Q  336 attatagctatcccaatgaaaatccggtgccatgtttaggaacttattttctcatttaatc----tagtagtcactacatttcattaaaaattaaccaaa 431  Q
    ||||||||||||||||||| | || ||||| ||| ||| |||||  ||||| | |||| ||    |||||||||| |  ||| |||||||  ||||||||    
T  39538017 attatagctatcccaatgagattctggtgctatgcttatgaactctttttcacttttattcaatgtagtagtcacaaagtttgattaaaatgtaaccaaa 39537918  T
Q  432 ttttaaccttcaaaatttgaagttagtagaaccaaatatg 471  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  39537917 ttttaaccttcaaaacttgaagttagtggaaccaaatatg 39537878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 722
Target Start/End: Original strand, 6509372 - 6509426
Alignment:
Q  668 tagcgtatatgaaaacaatttgaatttattttatcttgttttagatataaattat 722  Q
    |||| ||||| || ||||||||| |||||||||||||||| ||||||||| ||||    
T  6509372 tagcttatataaatacaatttgactttattttatcttgttatagatataacttat 6509426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 673 - 707
Target Start/End: Original strand, 22691594 - 22691628
Alignment:
Q  673 tatatgaaaacaatttgaatttattttatcttgtt 707  Q
    |||||||||||||||||||||||| ||||||||||    
T  22691594 tatatgaaaacaatttgaatttatgttatcttgtt 22691628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 710
Target Start/End: Complemental strand, 46825094 - 46825057
Alignment:
Q  673 tatatgaaaacaatttgaatttattttatcttgtttta 710  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  46825094 tatatgaaaacaatttgactttattttatcttttttta 46825057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 704
Target Start/End: Complemental strand, 11513904 - 11513863
Alignment:
Q  663 acttttagcgtatatgaaaacaatttgaatttattttatctt 704  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  11513904 acttatagcttatatgaaaacaatttgactttattttatctt 11513863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 704
Target Start/End: Complemental strand, 30371154 - 30371113
Alignment:
Q  663 acttttagcgtatatgaaaacaatttgaatttattttatctt 704  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  30371154 acttatagcttatatgaaaacaatttgagtttattttatctt 30371113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University