View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_high_5 (Length: 730)
Name: NF11976_high_5
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_high_5 |
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| [»] scaffold0790 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 527 - 680
Target Start/End: Complemental strand, 32285033 - 32284880
Alignment:
| Q |
527 |
caccattccacatattcaccaccaacaaaaactctcacgatacccccaccatcttcgccccagttcgacatatattctggtcaatcatcattcaatctac |
626 |
Q |
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| T |
32285033 |
caccattccacatattcaccaccaacaaaaactctcacgatacccccaccatcttcgccccagttcgacatatattttggtcaatcatcattcaatctac |
32284934 |
T |
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| Q |
627 |
ttctctttctcttcattatgttatcgccaccgttatctcaagtttccggcgatt |
680 |
Q |
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| T |
32284933 |
ttctcttcctcttcattatgttatcgccaccgttatctcaagtttccggcgatt |
32284880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0790 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: scaffold0790
Description:
Target: scaffold0790; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 467 - 680
Target Start/End: Complemental strand, 349 - 128
Alignment:
| Q |
467 |
catacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccaccattccacatattcaccaccaacaaaaactctcacga |
566 |
Q |
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| T |
349 |
catacactttgaagggtagttttgaatcggaagtgagagtgagtttgaaataaacctttccaccgttccacatattcaccaccaacaaaaactctcacgc |
250 |
T |
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| Q |
567 |
tacccccaccatcttcgccccagttcga-cat--------atattctggtcaatcatcattcaatctacttctctttctcttcattatgttatcgccacc |
657 |
Q |
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| T |
249 |
tacccccaccatctttgctcccgttgaatcatggttcaagaaattc-ggtcaatcatcactcgatctacttctcttcctcttcattatgttatcgccacc |
151 |
T |
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| Q |
658 |
gttatctcaagtttccggcgatt |
680 |
Q |
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| T |
150 |
gttatctcaagtttccggcgatt |
128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0790; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 783 - 673
Alignment:
| Q |
1 |
ataaaataatggctatagcagaactatagcgtggtggaatttgaacaaattgatataattccgcaatacgctgatcagtacaaagtgttatcaaacagca |
100 |
Q |
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|||||||| ||||||||||| ||||||||||||| | |||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
783 |
ataaaatactggctatagcaaaactatagcgtggcgcaatttgaacaaattaacataat--------acgctaatcagtacaaagtgttatcaaacagca |
692 |
T |
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| Q |
101 |
gaatttgaacaatcaacta |
119 |
Q |
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| T |
691 |
taatttgaacaatcaacta |
673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 258 - 375
Target Start/End: Complemental strand, 24428488 - 24428371
Alignment:
| Q |
258 |
ttaccattggttataatagcgctggtctgtggaggaactttgaatccttcagctgtgaatttgagaacgacagcaaaaggcgcagcctcaggaacactga |
357 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||| | | |||||| ||||| ||||||||||||| |
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| T |
24428488 |
ttaccattggtgataatagcgctggtctgtgggggaactttgaattcttcagctgcaaatttgagaacggcggtaaaaggtgcagcttcaggaacactga |
24428389 |
T |
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| Q |
358 |
aactgaaatcgtcaaaga |
375 |
Q |
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| T |
24428388 |
aactgaaatcgtgaaaga |
24428371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 467 - 560
Target Start/End: Complemental strand, 24428303 - 24428207
Alignment:
| Q |
467 |
catacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccacca---ttccacatattcaccaccaacaaaaactc |
560 |
Q |
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| T |
24428303 |
catacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccaccaccgttcgccatattcaccaccaactaaaactc |
24428207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 504 - 584
Target Start/End: Original strand, 33985988 - 33986068
Alignment:
| Q |
504 |
agtgactttgaaagaaacctttccaccattccacatattcaccaccaacaaaaactctcacgatacccccaccatcttcgc |
584 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
33985988 |
agtgactttgaaagaaacctttccaccgttccacatattcaccaccaacaaaaactctcacgctatccccaccatcttcgc |
33986068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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