View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11976_low_1 (Length: 924)

Name: NF11976_low_1
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11976_low_1
NF11976_low_1
[»] chr1 (8 HSPs)
chr1 (1-400)||(50466607-50467005)
chr1 (399-908)||(50466055-50466572)
chr1 (592-658)||(47417788-47417854)
chr1 (587-658)||(9639807-9639878)
chr1 (592-645)||(26525539-26525592)
chr1 (598-632)||(52592443-52592477)
chr1 (586-631)||(45224296-45224341)
chr1 (788-821)||(51019920-51019953)
[»] chr7 (5 HSPs)
chr7 (582-657)||(31525370-31525445)
chr7 (587-649)||(27270235-27270297)
chr7 (586-632)||(42753443-42753489)
chr7 (593-658)||(12212280-12212344)
chr7 (587-644)||(47960896-47960953)
[»] chr4 (3 HSPs)
chr4 (587-649)||(4513445-4513507)
chr4 (587-658)||(29908056-29908127)
chr4 (593-647)||(41536928-41536982)
[»] chr5 (2 HSPs)
chr5 (603-650)||(1745712-1745759)
chr5 (598-647)||(2053037-2053086)
[»] chr3 (1 HSPs)
chr3 (602-657)||(14741809-14741864)
[»] chr2 (2 HSPs)
chr2 (584-658)||(32902062-32902136)
chr2 (585-626)||(12129996-12130037)
[»] scaffold0262 (1 HSPs)
scaffold0262 (587-632)||(15946-15991)
[»] chr8 (1 HSPs)
chr8 (609-650)||(33620920-33620961)


Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 50467005 - 50466607
Alignment:
Q  1 ttatcattccttttatgtatcatgaggttacaattattctttgtcatgtttactattaaaagcttaatggctttaatttgataagaaataatgttgggga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50467005 ttatcattccttttatgtatcatgaggttacaattattctttgtcatgtttactattaaaagcttaatggctttaatttgataagaaataatgttgggga 50466906  T
Q  101 cctctactcaaacctcattttcaagtttgctaagtgttacttttatctacaactaagccattattttaggacccatgatcacatggatcagtgtacaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50466905 cctctactcaaacctcattttcaagtttgctaagtgttacttttatctacaactaagccattattttaggacccatgatcacatggatcagtgtacaagc 50466806  T
Q  201 atttgtttagtcacagaaaaaacaggtgcattattatttctaagttttctctataggataaggtgtgaagctttggataagagatcccaacttccctagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50466805 atttgtttagtcacagaaaaaacaggtgcattattatttctaagttttctctataggataaggtgtgaagctttggataagagatcccaac-tccctagc 50466707  T
Q  301 taatagtaactaataagcttgatatggagtcaactttaatggtttatagataccatcggattgatcaaaaggtggttgctacaatgccagcaaattataa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50466706 taatagtaactaataagcttgatatggagtcaactttaatggtttatagataccatcggattgatcaaaaggtggttgctacaatgccagcaaattataa 50466607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 399 - 908
Target Start/End: Complemental strand, 50466572 - 50466055
Alignment:
Q  399 aaaacaaaattgatcttcgaatataaaatgttacggtgacaataatttaattctaagtgttcataattttacttatttaaaatcaattttgattctttct 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  50466572 aaaacaaaattgatcttcgaatataaaatgttacggtgacaataatttaattctaagtgttcataattttacttatttaaaatcaattttaattctctct 50466473  T
Q  499 ctctctaaacttcttnnnnnnnntaattaattctcaaaaaatagaatcaaacatacattgacaatttagtgtttagaattggattcttgtgaccttaatt 598  Q
    |||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50466472 ctctctaaacttcttaaaaataataattaattctctaaaaatagaatcaaacatacattgacaatttagtgtttagaattggattcttgtgaccttaact 50466373  T
Q  599 caattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccacnnnnnnnnnnnn-------tgcatgggcggtggaatttat 691  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||                   |||||||||||||||||||||    
T  50466372 caattggtaaggataatgtataatatatacaagggtcggagttcgaacctcggtcaccacaaaaaaaaaaaaaaaaagatgcatgggcggtggaatttat 50466273  T
Q  692 ctcttcaaatctagcggttcctacaaaataaatctgcttaattgtaaagtagttctagatattctgaacacaattgtcaaacaatttgtttgcatatttt 791  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  50466272 ctcttcaaatctaacggttcctacaaaataaatctgcttaattgtaaagtagttctaaatattctgaacacaattgtcaaacaatttatttgcatatttt 50466173  T
Q  792 taatagtaattattagtatgt-taattgttataatannnnnnnnccatctaacctccaatttattaacctgtacctcaaaccacaacccaaatttgtgtg 890  Q
    ||||||||| ||||||||||| |  ||  | ||||             |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50466172 taatagtaaatattagtatgttttcttcatctaatttggacttgaatcccgacctccaatttattaacctgtacctcaaaccacaacccaaatttgtgtg 50466073  T
Q  891 cattttgcacataaaatt 908  Q
    ||||||||||||||||||    
T  50466072 cattttgcacataaaatt 50466055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 658
Target Start/End: Original strand, 47417788 - 47417854
Alignment:
Q  592 cttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 658  Q
    ||||| ||||||||| ||||||||  ||||||||| ||||| ||||||||| |||||||||||||||    
T  47417788 cttaactcaattggttaggacaatgcataatatatgcaaggttcggagttcaaacctcggtcaccac 47417854  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 587 - 658
Target Start/End: Complemental strand, 9639878 - 9639807
Alignment:
Q  587 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 658  Q
    |||| ||||| ||| ||||||||||||||  ||||||||| |||||  ||||||||||||||||| ||||||    
T  9639878 gtgagcttaactcacttggtaaggacaatgcataatatatgcaaggtccggagttcgaacctcggacaccac 9639807  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 645
Target Start/End: Complemental strand, 26525592 - 26525539
Alignment:
Q  592 cttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaa 645  Q
    ||||||||||||||||||||||||| |||||||||| || | ||| ||||||||    
T  26525592 cttaattcaattggtaaggacaatacataatatataaaacgttcgtagttcgaa 26525539  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 598 - 632
Target Start/End: Complemental strand, 52592477 - 52592443
Alignment:
Q  598 tcaattggtaaggacaatatataatatatacaagg 632  Q
    ||||||||||||||||||||||||||||| |||||    
T  52592477 tcaattggtaaggacaatatataatatatgcaagg 52592443  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 631
Target Start/End: Complemental strand, 45224341 - 45224296
Alignment:
Q  586 tgtgaccttaattcaattggtaaggacaatatataatatatacaag 631  Q
    ||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  45224341 tgtgagcttaactcaattggtaaggacaattcataatatatacaag 45224296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 788 - 821
Target Start/End: Complemental strand, 51019953 - 51019920
Alignment:
Q  788 tttttaatagtaattattagtatgttaattgtta 821  Q
    ||||||||||||| ||||||||||||||||||||    
T  51019953 tttttaatagtaaatattagtatgttaattgtta 51019920  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 582 - 657
Target Start/End: Complemental strand, 31525445 - 31525370
Alignment:
Q  582 ttcttgtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcacca 657  Q
    |||||||||  ||| ||||||||||| | |||||||||||||||||||||| |||  ||||||||||||| |||||    
T  31525445 ttcttgtgagtttagttcaattggtatgaacaatatataatatatacaaggttcgaggttcgaacctcggccacca 31525370  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 587 - 649
Target Start/End: Original strand, 27270235 - 27270297
Alignment:
Q  587 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctc 649  Q
    |||| ||||| ||| |||||| |||||||  ||||||||| ||||| ||||||||||||||||    
T  27270235 gtgaacttaactcagttggtatggacaatgcataatatatgcaaggttcggagttcgaacctc 27270297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 632
Target Start/End: Complemental strand, 42753489 - 42753443
Alignment:
Q  586 tgtgaccttaattcaattggtaaggacaatatataatatatacaagg 632  Q
    ||||| ||||| |||||||||| ||||||| ||||||||||||||||    
T  42753489 tgtgagcttaactcaattggtagggacaatgtataatatatacaagg 42753443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 658
Target Start/End: Original strand, 12212280 - 12212344
Alignment:
Q  593 ttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 658  Q
    |||||||| ||||||||||| || |||||||||| ||||| || | ||||||||||||| ||||||    
T  12212280 ttaattcagttggtaaggacgatgtataatatatgcaagg-tcagggttcgaacctcggacaccac 12212344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 644
Target Start/End: Original strand, 47960896 - 47960953
Alignment:
Q  587 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcga 644  Q
    |||| ||||| ||||||| ||||||||||| ||||||||| | ||| |||||||||||    
T  47960896 gtgagcttaactcaattgataaggacaatacataatatatgcgaggttcggagttcga 47960953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 649
Target Start/End: Complemental strand, 4513507 - 4513445
Alignment:
Q  587 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctc 649  Q
    |||| |||||||||||||||| ||||||| ||||||||||| |||| | | ||||||||||||    
T  4513507 gtgaacttaattcaattggtagggacaatgtataatatatagaagggttgaagttcgaacctc 4513445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 658
Target Start/End: Original strand, 29908056 - 29908127
Alignment:
Q  587 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 658  Q
    |||| ||||| ||| ||||||||||||||  ||||||||| |||||  |||||||| ||||||| |||||||    
T  29908056 gtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtccggagttcaaacctcgatcaccac 29908127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 593 - 647
Target Start/End: Original strand, 41536928 - 41536982
Alignment:
Q  593 ttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacc 647  Q
    |||| ||||||| ||||||||||| ||||||||| ||||| ||| ||||||||||    
T  41536928 ttaactcaattgataaggacaatacataatatatgcaaggttcgaagttcgaacc 41536982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 650
Target Start/End: Complemental strand, 1745759 - 1745712
Alignment:
Q  603 tggtaaggacaatatataatatatacaaggatcggagttcgaacctcg 650  Q
    ||||||||||||||||||| |||||||||| ||||||||  |||||||    
T  1745759 tggtaaggacaatatataaaatatacaaggttcggagtttaaacctcg 1745712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 647
Target Start/End: Original strand, 2053037 - 2053086
Alignment:
Q  598 tcaattggtaaggacaatatataatatatacaaggatcggagttcgaacc 647  Q
    ||||||||||||||||||  |||| ||||||||||  |||||||||||||    
T  2053037 tcaattggtaaggacaatgcataaaatatacaaggtccggagttcgaacc 2053086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 657
Target Start/End: Original strand, 14741809 - 14741864
Alignment:
Q  602 ttggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcacca 657  Q
    ||||||||||||||  ||||||||| ||||| | |||||||||||||||| |||||    
T  14741809 ttggtaaggacaatgcataatatatgcaaggtttggagttcgaacctcggacacca 14741864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 584 - 658
Target Start/End: Original strand, 32902062 - 32902136
Alignment:
Q  584 cttgtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 658  Q
    ||||||| |||| |||| | |||| ||||||||||||||||||  ||||  || ||||| |||||||||||||||    
T  32902062 cttgtgaacttagttcagtcggtagggacaatatataatatatgtaaggtacgaagttcaaacctcggtcaccac 32902136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 626
Target Start/End: Complemental strand, 12130037 - 12129996
Alignment:
Q  585 ttgtgaccttaattcaattggtaaggacaatatataatatat 626  Q
    |||||| ||||| |||||||||||||||||||||| ||||||    
T  12130037 ttgtgagcttaactcaattggtaaggacaatatattatatat 12129996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 632
Target Start/End: Complemental strand, 15991 - 15946
Alignment:
Q  587 gtgaccttaattcaattggtaaggacaatatataatatatacaagg 632  Q
    |||| ||||| |||||||||||||||||| |||||||||| |||||    
T  15991 gtgagcttaactcaattggtaaggacaatgtataatatatgcaagg 15946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 650
Target Start/End: Original strand, 33620920 - 33620961
Alignment:
Q  609 ggacaatatataatatatacaaggatcggagttcgaacctcg 650  Q
    |||||||  ||||||||||||||| |||||||||||||||||    
T  33620920 ggacaatgcataatatatacaaggttcggagttcgaacctcg 33620961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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