View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_10 (Length: 467)
Name: NF11976_low_10
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 10760311 - 10760762
Alignment:
| Q |
1 |
catcccaattgcagctttgaaatggccaactccagtgccaccccaaatcacaattcgggaaacagttatgcttcctgatcatgttttaatgttcttaaac |
100 |
Q |
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| T |
10760311 |
catcccaattgcagctttgaaatggccaactccagtgccaccccaaatcacaattcgggaaacagttttgcttcctgatcatgttttaattttcttaaac |
10760410 |
T |
|
| Q |
101 |
taccctttatcttttcgctatcacaccaaacatgaccttcaatgtgtttactcttcagatgatgactcaaaacctcgtctcactcaagaaccggttcaac |
200 |
Q |
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| T |
10760411 |
taccctttatcttttcgctatcacaccaaacgtgaccttcaatgtgtttactcttcagatcatgactcaaaacctcgtctcactcaagaaccggttcaac |
10760510 |
T |
|
| Q |
201 |
tttactcgattaggcttcacgaacaaattgtacgttgtccaatccctccacgtggcgataatatatcacttatgataaaatccaacggtcccattaaaat |
300 |
Q |
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| T |
10760511 |
tttactcgattaggcttcacgaacaaattgtacgttgtccaatccctccacgtggtgagaatatatcacttatgataaaatccaacggtcccattcaaat |
10760610 |
T |
|
| Q |
301 |
aaaaaagtcgtcaatccataattgggaaccactagtctacgaagctctcttcgatcacgacaacaccaccatcgtatttgtgaaaggccttaatctaaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
10760611 |
aaaaaagtcgtcaatccataattgggaaccactagtctacgaagctctcttcgatcgcgacaacaccaccatcgtatttgtgaaaggccttaatctacga |
10760710 |
T |
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| Q |
401 |
ccagagaaattaggtgaaccctctagattccaatgtgtatatggttgggatt |
452 |
Q |
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| T |
10760711 |
ccagagaaattaggtgaaccctctagattccaatgtgtatatggttgggatt |
10760762 |
T |
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