View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_12 (Length: 407)
Name: NF11976_low_12
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 28608106 - 28608503
Alignment:
| Q |
1 |
aagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactaccttttttaataactcacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28608106 |
aagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactcccttttttaataactcacac |
28608205 |
T |
|
| Q |
101 |
ttcaaaattataaatgtttaatttttgatttgttataatgtgtaatttcagattattactccaccaacctatgttgttttaacatcagcagttattttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608206 |
ttcaaaattataaatgtttaatttttgatttgttataatgtgtcatttcagattattactccaccaacctatgttgttttaacatcagcagttattttaa |
28608305 |
T |
|
| Q |
201 |
tgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagacttgatgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608306 |
tgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagacttgatgc |
28608405 |
T |
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| Q |
301 |
agagcttaggattctagcatgtgttcataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgc |
398 |
Q |
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| T |
28608406 |
agagcttaggattctagcatgtgttcataatactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgc |
28608503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 438797 - 438403
Alignment:
| Q |
1 |
aagggtgtcgttgcattaataatgctcaacatttcatgggatagaatggtattgatctacttgaaaattattatttactaccttttttaataactcacac |
100 |
Q |
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||||||||||||||| | ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | || |
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| T |
438797 |
aagggtgtcgttgcactgataatgctcaatatttcctgggatagatcggtattgatctacttgaaaattattatttactcccttttttaataacgctaac |
438698 |
T |
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| Q |
101 |
ttcaaaattataaat-gtttaatttttgatttgttataatgtgtaatttcagattattactccaccaacctatgttgttttaacatcagcagttatttta |
199 |
Q |
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||||||||||||| ||| ||| ||||||||| || ||||||| || ||||| || |||||||||| |||| ||||||||| || |||||| || || |
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| T |
438697 |
gtcaaaattataaaaagttcaatctttgatttgcta--atgtgtatttgtagattctttctccaccaacatatgctgttttaacctctgcagttcttcta |
438600 |
T |
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| Q |
200 |
atgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagacttgatg |
299 |
Q |
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|||||||||||||| ||||| |||| |||| |||||||||||||| |||||||| |||| | || ||||||||||||||||||||||| |||||||||| |
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| T |
438599 |
atgactatagtggtggctcctgtcatcaatgccatatacaagcccagaaagagatttgagaataataagctaaagactatacaaaagcttagacttgatg |
438500 |
T |
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| Q |
300 |
cagagcttaggattctagcatgtgttcataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctat |
396 |
Q |
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| T |
438499 |
cagagcttaggattctagcatgtgttcacaatactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctat |
438403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 124 - 396
Target Start/End: Original strand, 13659600 - 13659872
Alignment:
| Q |
124 |
tttgatttgttataatgtgtaatttcagattattactccaccaacctatgttgttttaacatcagcagttattttaatgactatagtggtagctcccatc |
223 |
Q |
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|||||||||||||||||||| ||| |||||| || ||||||| ||| ||| ||||||||| | ||||| ||||||||||||||||||| |||||| |
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| T |
13659600 |
tttgatttgttataatgtgtcattgcagattctttctccacccacccatgctgttttaactgctgcagtacttttaatgactatagtggtgcctcccaca |
13659699 |
T |
|
| Q |
224 |
ataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagacttgatgcagagcttaggattctagcatgtg |
323 |
Q |
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|| ||||||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
13659700 |
atcaatgtcatatataagccgagaaagagatttgagcagaacaagctaaagactatacaaaagcttagacttgatgcagagcttaggattcttacatgtg |
13659799 |
T |
|
| Q |
324 |
ttcataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctat |
396 |
Q |
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|||||||| |||| |||||| ||||||||| |||||| |||||||||||||||| |||||| |||||||||| |
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| T |
13659800 |
ttcataatgctcgccaggctacaggggttatcagcctcgttgaatctttcaatgctactagaatttcccctat |
13659872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 195 - 396
Target Start/End: Original strand, 13652171 - 13652372
Alignment:
| Q |
195 |
ttttaatgactatagtggtagctcccatcataaatgtcatatacaagcccaaaaagagatatgagcaaaacaagctaaagactatacaaaagctcagact |
294 |
Q |
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||||||||||||| ||||| ||| | | || |||| ||||| ||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||| |
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| T |
13652171 |
ttttaatgactattgtggttcctctcgttattaatgcgatatataagcccaggaagagatttgagcagaacaagctaaagactatacaaaagcttagact |
13652270 |
T |
|
| Q |
295 |
tgatgcagagcttaggattctagcatgtgttcataatactcgtcaggctgtaggggttattagcctcattgaatctttcaatgccactagactttcccct |
394 |
Q |
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||||||||| |||||||||||| |||||||||| |||||||| || ||| |||||||||| | ||||||| | |||||||||||||||||| |||||||| |
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| T |
13652271 |
tgatgcagaacttaggattctaacatgtgttcacaatactcgccacgctataggggttatcaacctcattcagtctttcaatgccactagaatttcccct |
13652370 |
T |
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| Q |
395 |
at |
396 |
Q |
| |
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|| |
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| T |
13652371 |
at |
13652372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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