View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_15 (Length: 327)
Name: NF11976_low_15
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 13879691 - 13879996
Alignment:
| Q |
1 |
gttgttcagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcga |
100 |
Q |
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| T |
13879691 |
gttgttcagctcattggtgttgaaatagcgaatgagtcgtggagtggcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcga |
13879790 |
T |
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| Q |
101 |
atgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttgacagttgacagagtgagattttcttggg |
200 |
Q |
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| T |
13879791 |
atgaatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttaacagttgac--agtgagattttcttggg |
13879888 |
T |
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| Q |
201 |
attgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaatggcttaagaatgttctagaaggatactaacttggctatcaagagactttg |
300 |
Q |
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| T |
13879889 |
attgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaatggctttagaatgttctagaaggatactaacttggctatcaagagactttg |
13879988 |
T |
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| Q |
301 |
cttagtga |
308 |
Q |
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|||||||| |
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| T |
13879989 |
cttagtga |
13879996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 13875477 - 13875767
Alignment:
| Q |
10 |
ctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatgaatgca |
109 |
Q |
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| T |
13875477 |
ctcattggtgttgaaatagcgaatgagtggaggtgcggtgtaggagatggctacgagtgacatggcggcagtagcgacggggtggcggcgaatgagtgaa |
13875576 |
T |
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| Q |
110 |
ggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga--------cagttgacagagt--gagattttcttgg |
199 |
Q |
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| T |
13875577 |
ggcacggcggccatgaatgagcggtagcaggaagagaggaggcgggaaaatgccattgtgttgaagaaacttgacttcacagatttagagatttttttgg |
13875676 |
T |
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| Q |
200 |
gattgctttctctctttatcgcttgcttttagggtttttgtagtga----------aaaatggcttaagaatgttctagaaggatactaacttgg |
284 |
Q |
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| T |
13875677 |
gattgctttctttcttt----cttaattttagggtttttgtagtgagtgagttagtgaaatggcttaagaatgttctagaaggatactaacttgg |
13875767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 13885860 - 13885912
Alignment:
| Q |
256 |
aagaatgttctagaaggatactaacttggctatcaagagactttgcttagtga |
308 |
Q |
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| T |
13885860 |
aagaaggttctagaaggatactaccttggctaccaagccactttgcttagtga |
13885912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 13885596 - 13885756
Alignment:
| Q |
4 |
gttcagctcattggtgttgaaatagtgaatgagtcgaggagcagcgtaggagatggcaaccagagacatggcggcagtagcgaaggggcggtggcgaatg |
103 |
Q |
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|||| ||||| |||||||||| || |||| ||| || |||| |||||||||||| ||| ||||| | |||||| ||| ||||||| |||||||| |
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| T |
13885596 |
gttctgctcagtggtgttgaagtaacgaatcagtggacgagcggcgtaggagatgccaaagtaagacacagtggcagtgacgatggggcggcggcgaatg |
13885695 |
T |
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| Q |
104 |
aatgcaggcacggcggacatgaaagagtggtaagaggaagaaaggaggcgggaaaatgccattgtgttga |
173 |
Q |
| |
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|||| ||||||||||| | |||| ||| ||||| |||| ||||||||||||||||||||||| |
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| T |
13885696 |
aatgtaggcacggcggccttgaaggag---------gaagagaggaagcgggaaaatgccattgtgttga |
13885756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 13870759 - 13870807
Alignment:
| Q |
256 |
aagaatgttctagaaggatactaacttggctatcaagagactttgctta |
304 |
Q |
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||||| ||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
13870759 |
aagaaggttctagaatgatactaacttggctaccaagccactttgctta |
13870807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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