View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_16 (Length: 326)
Name: NF11976_low_16
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 324
Target Start/End: Original strand, 19427749 - 19428070
Alignment:
| Q |
4 |
aggaagattgtattatat-ggaattataaaataaaaaacatttaattacaatggaatatgctaaggaataatataaacaatatgttattctagatttctc |
102 |
Q |
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| T |
19427749 |
aggaagattgtattatataggaattataaaataaaaaacatttaattataatggaatatgctaaggaataatataaacaatatgttattctagatttctc |
19427848 |
T |
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| Q |
103 |
tacattatatttacaaatattaacaaataccttgaaaaaattctcatttgttgttatgtcttttgttatgatgttccgtcaaatacatcttttaaattac |
202 |
Q |
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| T |
19427849 |
tacattatatttacaaatattaacaaataccttgaaaaaattctcatttgttgttatgtcttttactgtgatgttctgtcaaatacatcttttagattac |
19427948 |
T |
|
| Q |
203 |
acatatccttatagtgaaaggatgatttcccagctcaagggagaaaataagataagactcatagatcatctacaaataaatctggcttaactgattattc |
302 |
Q |
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| T |
19427949 |
acatatccttatagtgaaacgatgatgtcccggctcaagggagaaaataagttaagactcatagaccacctacaaataaatttggcttaactgattattc |
19428048 |
T |
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| Q |
303 |
aatcccttaacgtaattctctg |
324 |
Q |
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| T |
19428049 |
aatcccttaacgtaatcctctg |
19428070 |
T |
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