View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_2 (Length: 817)
Name: NF11976_low_2
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 20 - 589
Target Start/End: Original strand, 14148572 - 14149136
Alignment:
| Q |
20 |
ttagttatcagctgtcaatcgccagaatttattttcaataatcaggcagctgctttgcagaaattagttttactactaagctaagggtttgaatacaagt |
119 |
Q |
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| T |
14148572 |
ttagttatccgctgtcaatcaccagaatttattttcaataatcaggcagctgctttgcagaaattagttttacta---agttaagggtttgaatacaagt |
14148668 |
T |
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| Q |
120 |
caagctattctaactagtattaagaatctggtgttgttaggtcccttgcatcctagccttgtgagccattgggcacatttcgttgctggggaaaaggaat |
219 |
Q |
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| T |
14148669 |
caagctattctaactagtattaagaatctggtgttgttaggtcccttgcatcctagccttgtgagccattgggcacatttcgttgctagggaaaaggaat |
14148768 |
T |
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| Q |
220 |
gaaggggtagcatccgaaaattgcatgttaataattcatttgagggactggttttaggaaggattaactggtggtctcatctcagcgcatatcttaacca |
319 |
Q |
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| T |
14148769 |
gaaggggtagcatccgaaaattgcatgtcagtaattcatttgagggactggttttaggaaggattaactggtggtctcatctcagcgcatatcttaacca |
14148868 |
T |
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| Q |
320 |
ctcatttggagtttggacacatcaaaaccaggtgcaagttcagggttcaactgtgaggtataaagcttaatagtgttatggtttagtctcattatttccc |
419 |
Q |
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| T |
14148869 |
ctcatttggagtttggacacatcaaaaccaggtgcaagttcagggttcaactgtgaggtataatgcttaatagtgttatggtttagtctcgttatttccc |
14148968 |
T |
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| Q |
420 |
atcaacatttttacaaagatgagatgatatacatcatatcaaaattcttagatatgctcaaacacaatactagtagtcgataagcttcatcaacacaaaa |
519 |
Q |
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| T |
14148969 |
atcaacatttttacaaagatgagatg--atacatcatatcaaaattcttagatatgctcaaacacaatacaagtagtcgataagcttcatcaacacaaaa |
14149066 |
T |
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| Q |
520 |
aggtgttgatgattcctcattctttgacaattgatccttttcttaattttgtcattctaaggggagaagg |
589 |
Q |
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| T |
14149067 |
aggtgttgatgattcctcattctttgacaattgatccttttcttaattttgtcattctaagggaagaagg |
14149136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 614 - 808
Target Start/End: Original strand, 14149198 - 14149393
Alignment:
| Q |
614 |
ctagttgaagcttcacaatgctcgaataggctaaactttaaattctaacctctaatggggttctggtgtaaaggaaa-gttgttttcttaaataattcat |
712 |
Q |
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| T |
14149198 |
ctagttgaagcttcacaatgctcgaataggctaaactttaaattctaacctctaatggggttctggtgtaaaggaaaagttgttttcttaaataattcat |
14149297 |
T |
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| Q |
713 |
aggattactacgtcttttaattgtgaaatagcttcttattcttactcaaacactgagacattttgcttcttcgtccctgtcactcctctccctttg |
808 |
Q |
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| T |
14149298 |
aggattactacgtcttttaattttgaaatagcttcttattcctactcaaacaccgagacattttgcttcttcgtccctgtcactcctctccctttg |
14149393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 484 - 589
Target Start/End: Original strand, 14143440 - 14143545
Alignment:
| Q |
484 |
caatactagtagtcgataagcttcatcaacacaaaaaggtgttgatgattcctcattctttgacaattgatccttttcttaattttgtcattctaagggg |
583 |
Q |
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| T |
14143440 |
caatactagaagtcgataagtttcaacaacacaaaaaggtattaatgattcctcattcattgacgatcaatcatgttcttaatcttgtcattctaaggga |
14143539 |
T |
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| Q |
584 |
agaagg |
589 |
Q |
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|||||| |
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| T |
14143540 |
agaagg |
14143545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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