View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_21 (Length: 263)
Name: NF11976_low_21
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 45938776 - 45939023
Alignment:
| Q |
1 |
gccacaagcatatggagtgatattcaaagatacattgggaatcatacatagagcaacacataagctccaaagtgaagaatgaaataatagtatcagctgg |
100 |
Q |
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| T |
45938776 |
gccacaagcatatggagtgatattcaaagatacattgggaatcatacaaagagcaacacataagctccaaagtgaagaatgaaataatagtatcagctgg |
45938875 |
T |
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| Q |
101 |
tgcaattggaagtccacaattgttgatgctaagtggtattggtcctgctaaccatcttaaggaacatggaattcaagtggttttggatcagcctttggta |
200 |
Q |
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| T |
45938876 |
tgctattggaagtccacaattgttgatgccaagtggcattggtcctgctaaccatcttaaggaacatggaattcaagtggttttggatcagcctttggta |
45938975 |
T |
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| Q |
201 |
ggtcaagggatggcagataatccaatgaccattctagttgttccttct |
248 |
Q |
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| T |
45938976 |
ggtcaagggatggcagataatccaatgaacattctagttgttccttct |
45939023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45945602 - 45945825
Alignment:
| Q |
1 |
gccacaagcatatggagtgatattcaaagatacattgggaatcatacatagagcaacacataagctccaaagtgaagaatgaaataatagtatcagctgg |
100 |
Q |
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| T |
45945602 |
gccacaagcttatggagtgattttcaaagatacattaggaatcatacatagagcat-acataatctccaaagtggataatgaaataattgtatcagctgg |
45945700 |
T |
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| Q |
101 |
tgcaattggaagtccacaattgttgatgctaagtggtattggtcctgctaaccatcttaaggaacatggaattcaagtggttttggatcagcctttggta |
200 |
Q |
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| T |
45945701 |
tgcaattggaagtccacagttactgatgctgagtggcattggtcctgctaaccatcttaaggcgcttggaatccaggtggttatggatcagccttttgtt |
45945800 |
T |
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| Q |
201 |
ggtcaagggatggcagataatccaa |
225 |
Q |
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| T |
45945801 |
ggtcaagggatggcagatagtccaa |
45945825 |
T |
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