View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_29 (Length: 236)
Name: NF11976_low_29
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 3340652 - 3340454
Alignment:
| Q |
20 |
gctgtttcataaatttatgtgagtattttgtatcagcaaggaaaaatagaaaatgtagcatatattttagggaaaatgtaacattttaatatgcatgaaa |
119 |
Q |
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| T |
3340652 |
gctgtttcataaatttatgtgagtattttgtatcagcaaggaaaaatagaaaatgtagcatatattttagggaaaatgtaacattttaatatgcatgaaa |
3340553 |
T |
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| Q |
120 |
gattttagattaagaaaaatacctgtgaaatcatctcccaattgtttgtattcactggttgtatttgagtaggaaaatccaactccaacaggagattca |
218 |
Q |
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| T |
3340552 |
gattttagattaagtaaaatacctgtgaaatcatctcccaattgtttgtattcactggttgtatttgagtaggaaaatccaactccaacaggagattca |
3340454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 3332931 - 3332882
Alignment:
| Q |
168 |
tattcactggttgtatttgagtaggaaaatccaactccaacaggagattc |
217 |
Q |
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| T |
3332931 |
tattcactggttgtatttgaataagaaaatccaactccaacaggagattc |
3332882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 35794644 - 35794721
Alignment:
| Q |
140 |
acctgtgaaatcatctcccaattgtttgtattcactggttgtatttgagtaggaaaatccaactccaacaggagattc |
217 |
Q |
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| T |
35794644 |
acctgtgaagtcatcacccaattgttgataatcactggttgtatttgaataggaaaagccaactccgacaggagattc |
35794721 |
T |
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