View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11976_low_4 (Length: 732)

Name: NF11976_low_4
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11976_low_4
NF11976_low_4
[»] chr5 (2 HSPs)
chr5 (1-717)||(2655465-2656181)
chr5 (647-702)||(2696063-2696118)


Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 1 - 717
Target Start/End: Complemental strand, 2656181 - 2655465
Alignment:
Q  1 aagtctactgtgattctcagtcccaattctgttcttctatctcatcaaaactgtttgaatgtgaagaaggagaaatcatgtagatctcatagactagaag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2656181 aagtctactgtgattctcagtcccaattctgttcttccatctcatcaaaactgtttgaatgtgaagaaggagaaatcatgtagatctcatagactagaag 2656082  T
Q  101 agaatatagaaactagaagaggttccatttatctgagtccaaatcagaagaaaatggccacaattcaggaaaggaaaaagatagaaatttcaagtaggac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2656081 agaatatagaaactagaagaggttccatttatctgagtccaaatcagaagaaaatggccacaattcaggaaaggaaaaagatagaaatttcaagtaggac 2655982  T
Q  201 tagtgacaactcttattcgggtagcattttttatgcattgtgtagtggttcagatgatgaaggttctgttgaggttgagacaccttcttcagtaatatct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2655981 tagtgacaactcttattcgggtagcattttttatgcattgtgtagtggttcagatgatgaagattctgttgaggttgagacaccttcttcagtaatatct 2655882  T
Q  301 caggaatcacaattgagttctcaatctccatcggtttcttgttcctgtacttgtatggatcacaacatatcaagtagttttattgaattttgcataaatt 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2655881 caggattcacaattgagttctcaatctccatcggtttcttgttcctgtacttgtatggatcacaacatatcaagtagttttattgaattttgcataaatt 2655782  T
Q  401 caggtgtttgtgataaaaaatctagtgtagtagaagtagtaggttctgtaaattcaaagattagaagtaataaggttaatgattctcttgtaattggtaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2655781 caggtgtttgtgataaaaaatctagtgtagtagaagtagtaggttctgtaaattcaaagattagaagtaataaggttaatgattctcttgtaattggtaa 2655682  T
Q  501 taattctcctcttcaaaaagtcaaaataactcattctcaccaaccatatccatcagaaagtgattgttcatcaagagtgagttcaaaagtcccattcact 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2655681 taattctcctcttcaaaaagtgaaaataactcattctcaccaaccatatccatcagaaagtgattgttcatcaagagtgagttcaaaagtcccattcact 2655582  T
Q  601 ccaatcagaaaaaggctaaatcctttcacaaagtcaaagaaagttgcaagaaacatggcttgtcaaaaatctttgttgaatgaattttccaacacaacaa 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2655581 ccaatcagaaaaaggctaaatcctttcacaaagtcaaagaaagttgcaagaaacatggcttgtcaaaaatctttgttgaatgacttttccaacacaacaa 2655482  T
Q  701 aaggtgctgacattgtt 717  Q
    |||||||||||||||||    
T  2655481 aaggtgctgacattgtt 2655465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 647 - 702
Target Start/End: Original strand, 2696063 - 2696118
Alignment:
Q  647 caagaaacatggcttgtcaaaaatctttgttgaatgaattttccaacacaacaaaa 702  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||    
T  2696063 caagaaacatggtttgtcaaaaacctttgttgaatgatttttccaacacaaaaaaa 2696118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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