View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_7 (Length: 555)
Name: NF11976_low_7
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 43050372 - 43050683
Alignment:
| Q |
19 |
atgtgttgtaaactaatagaaacttacccttaccctttcctgtacatacaacctctagatttgattgacttaagatgcattgtcaaatgaggaacatgac |
118 |
Q |
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| T |
43050372 |
atgtgttgtaaactaatagaaacttacccttaccctttcctgtacatacaacctctagatttgattgacttaagatgcattgtcaaatgaggaacatgac |
43050471 |
T |
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| Q |
119 |
agcaacagttttgcttccctacaagggaatagggaaaaaatttaaaatttaagagagtcttggcctgttagatagataccatgatacccgtgtagtgcag |
218 |
Q |
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| T |
43050472 |
agcaacagttttgcttccctacaagggaatagggaaaaaatttaaaatttaagagagtcttggcctgttagatagataccatgatacccgtgtagtgcag |
43050571 |
T |
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| Q |
219 |
ccaatgttgttaaatggtggctatagcggtgttataacgctacgtatatattatttttggaatgttacatttacatcgtagtgaaaaagaagtgtttcca |
318 |
Q |
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| T |
43050572 |
ccaatgttgttaaatggtggctatagcggtgctataacgctacgtatatattatttttggaatgttacatttacatcgtagtgaaaaagaagtgtttcca |
43050671 |
T |
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| Q |
319 |
ctgccgttatcg |
330 |
Q |
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| T |
43050672 |
ctgccgttatcg |
43050683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 374 - 538
Target Start/End: Original strand, 43050727 - 43050891
Alignment:
| Q |
374 |
tgattggaaaattgtgtttaatgttttcagtataattatatctctcaactttataagacttccttttttatgtttggcaattggattgcaggtaagggtt |
473 |
Q |
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| T |
43050727 |
tgattggaaaattgtgtttaatgttttcagtataattatatctctcaactttataagacttccttttttatgtttggcaattggattgcaggtaagggtt |
43050826 |
T |
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| Q |
474 |
gtcaaatgcacagtgaaaaatattgcagttgacatctcctttaatcagatggctggactctgtgc |
538 |
Q |
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| T |
43050827 |
gtcaaatgcacagtgaaaaatattgcagttgacatctcctttaatcagatggctggactctgtgc |
43050891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 374 - 540
Target Start/End: Original strand, 43034751 - 43034916
Alignment:
| Q |
374 |
tgattggaaaattgtgtttaatgttttcagtataattatatctctcaactttataagacttccttttttatgtttggcaattggattgcaggtaagggtt |
473 |
Q |
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| T |
43034751 |
tgattggaaaattgtgtttaatgttttcaatataattatatctctcgactttataagacttcctttt-tatgtttggcaattggactgcaggtaagggtt |
43034849 |
T |
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| Q |
474 |
gtcaaatgcacagtgaaaaatattgcagttgacatctcctttaatcagatggctggactctgtgctc |
540 |
Q |
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| T |
43034850 |
gtcaaatgcacagtgaaaaatattgcagttgacatctcctttaatcagatggctggactctatgctc |
43034916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 43034640 - 43034707
Alignment:
| Q |
263 |
tatatattatttttggaatgttacatttacatcgta-gtgaaaaagaagtgtttccactgccgttatcg |
330 |
Q |
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| T |
43034640 |
tatatattatttttgaaatgtt-catttacatcctatgtgaaaaagaagtgtttccactgcagttatcg |
43034707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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