View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11976_low_8 (Length: 504)

Name: NF11976_low_8
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11976_low_8
NF11976_low_8
[»] chr7 (14 HSPs)
chr7 (18-316)||(27848711-27849009)
chr7 (65-374)||(27831374-27831683)
chr7 (309-374)||(27846605-27846670)
chr7 (375-425)||(37548315-37548365)
chr7 (375-423)||(10015277-10015325)
chr7 (374-425)||(36628989-36629040)
chr7 (321-374)||(29578171-29578224)
chr7 (375-412)||(30081983-30082020)
chr7 (320-374)||(3146879-3146933)
chr7 (374-421)||(6188830-6188877)
chr7 (374-421)||(6195346-6195393)
chr7 (309-340)||(17259845-17259876)
chr7 (318-364)||(8575939-8575985)
chr7 (375-421)||(12383100-12383146)
[»] chr6 (3 HSPs)
chr6 (375-425)||(4090316-4090366)
chr6 (373-411)||(20990759-20990797)
chr6 (381-425)||(18617307-18617351)
[»] chr4 (5 HSPs)
chr4 (375-421)||(56366419-56366465)
chr4 (374-421)||(14032325-14032372)
chr4 (374-421)||(14191737-14191784)
chr4 (374-421)||(28142871-28142918)
chr4 (375-425)||(49243584-49243634)
[»] chr3 (4 HSPs)
chr3 (373-425)||(9467000-9467052)
chr3 (375-423)||(33444066-33444114)
chr3 (374-421)||(36641834-36641881)
chr3 (375-421)||(6024178-6024224)
[»] scaffold0065 (1 HSPs)
scaffold0065 (375-422)||(66832-66879)
[»] chr5 (3 HSPs)
chr5 (375-424)||(32699270-32699319)
chr5 (375-423)||(43323249-43323297)
chr5 (377-421)||(38491672-38491716)
[»] chr8 (4 HSPs)
chr8 (375-421)||(40971736-40971782)
chr8 (374-421)||(28517092-28517139)
chr8 (375-421)||(6926981-6927027)
chr8 (381-421)||(12700747-12700786)
[»] chr2 (6 HSPs)
chr2 (119-203)||(12246076-12246160)
chr2 (374-421)||(2566229-2566276)
chr2 (303-374)||(11999006-11999077)
chr2 (374-421)||(45276925-45276972)
chr2 (320-374)||(16662491-16662545)
chr2 (375-412)||(29303806-29303843)
[»] scaffold0311 (1 HSPs)
scaffold0311 (375-421)||(4570-4616)
[»] chr1 (3 HSPs)
chr1 (375-421)||(26222318-26222364)
chr1 (374-424)||(33048686-33048736)
chr1 (373-421)||(21906689-21906737)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 27849009 - 27848711
Alignment:
Q  18 gatacttccttggcagcaactgtcaatgtaccgtttccatcaattgtaaaacatacatcaaaaggatggccgcggagggcaggagggaatccagagagag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27849009 gatacttccttggcagcaactgtcaatgtaccgtttccatcaattgtaaaacatacatcaaaaggatggccgcgaagggcaggagggaatccagagagag 27848910  T
Q  118 taaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcagaggattggttatcttcacttgtataaaaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27848909 taaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcagaggattggttatcttcacttgtataaaaaac 27848810  T
Q  218 ttttgtcgttttgacaggtatagtagtaatcctaggaataactacacccatttgattatgctctagcctccaacctaaagacagtggagtaacatcgat 316  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27848809 ttttgtcgtcttgacaggtatagtagtattcctaggaataactacacccatttgattatgctctagcctccaacctaaagacagtggagtaacatcgat 27848711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 65 - 374
Target Start/End: Complemental strand, 27831683 - 27831374
Alignment:
Q  65 aaaacatacatcaaaaggatggccgcggagggcaggagggaatccagagagagtaaaagagccaagccgattgttgtcactggccttagttctctccccc 164  Q
    ||||||||||| |||||||||||  ||  | ||||| |  || |||| |||| ||||||| |||||  |||||||||| |||||  ||||||||||||||    
T  27831683 aaaacatacataaaaaggatggcgacgaggcgcaggggtcaacccagtgagattaaaagaaccaagtagattgttgtcgctggctctagttctctccccc 27831584  T
Q  165 tcataaacactgatcaaggcagaggattggttatcttcacttgtataaaaaacttttgtcgttttgacaggtatagtagtaatcctaggaataactacac 264  Q
    |||||||| ||||| ||| || ||| ||||||||||||| ||||| |||||||||||||| | |||||||||||||| ||| | ||| |||| ||||||     
T  27831583 tcataaaccctgataaagacaaaggtttggttatcttcagttgtaaaaaaaacttttgtcttcttgacaggtatagtggtatttctatgaatcactacag 27831484  T
Q  265 ccatttgattatgctctagcctccaacctaaagacagtggagtaacatcgatcaacaccaagtttggaacattcttaatgtcatcacccaacaaagcagc 364  Q
    |||| |||| |||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  27831483 ccatgtgatcatgtataagcctccaacctaaagacagtggagtaacatcgatcaacaccaagtttggaacattcataatgtcatcactcaacaaagcagc 27831384  T
Q  365 ctgcacagct 374  Q
    ||||||||||    
T  27831383 ctgcacagct 27831374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 27846670 - 27846605
Alignment:
Q  309 acatcgatcaacaccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 374  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27846670 acatcgatcaacactaagtttggaacattcttaatgtcatcactcaacaaagcagcctgcacagct 27846605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 37548315 - 37548365
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37548315 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 37548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 10015277 - 10015325
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagg 423  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10015277 cagggccgttcctaacattttaggggccttaggcatagaatgaaaaagg 10015325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 36629040 - 36628989
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 425  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| ||||||    
T  36629040 tcagggtcgttcctagcattttaggggccttaggtatagaatgaagaagggc 36628989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 29578224 - 29578171
Alignment:
Q  321 accaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 374  Q
    ||||| |||||||||||||||||| |||||  ||||||||||||||||||||||    
T  29578224 accaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagct 29578171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 412
Target Start/End: Original strand, 30081983 - 30082020
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatag 412  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30081983 cagggccgttcctagcattttaggggccttaggcatag 30082020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 3146879 - 3146933
Alignment:
Q  320 caccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 374  Q
    |||||||||||||||||| |||| ||| |||| |||||||||||| |||||||||    
T  3146879 caccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagct 3146933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 6188830 - 6188877
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  6188830 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 6188877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 6195346 - 6195393
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  6195346 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 6195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 17259845 - 17259876
Alignment:
Q  309 acatcgatcaacaccaagtttggaacattctt 340  Q
    ||||||||||||||||||||||||||||||||    
T  17259845 acatcgatcaacaccaagtttggaacattctt 17259876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 8575939 - 8575985
Alignment:
Q  318 aacaccaagtttggaacattcttaatgtcatcacccaacaaagcagc 364  Q
    |||||||||||||||||||||||| || | |||| ||||||||||||    
T  8575939 aacaccaagtttggaacattcttactgccttcactcaacaaagcagc 8575985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 12383146 - 12383100
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  12383146 cagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 12383100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 4090316 - 4090366
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 425  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4090316 cagggccgttcctagcattttaggggtcttaggcatagaatgaaaaagggc 4090366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 411
Target Start/End: Complemental strand, 20990797 - 20990759
Alignment:
Q  373 ctcagggccgttcctagcattttaggggccttaggcata 411  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  20990797 ctcagggccgttcctagcgttttacgggccttaggcata 20990759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 18617351 - 18617307
Alignment:
Q  381 cgttcctagcattttaggggccttaggcatagaatgaaaaagggc 425  Q
    |||||||||  ||||| ||||||||||||||| ||||||||||||    
T  18617351 cgttcctagagttttacgggccttaggcatagcatgaaaaagggc 18617307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 56366419 - 56366465
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  56366419 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 56366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 14032325 - 14032372
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  14032325 tcagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 14032372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 14191737 - 14191784
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  14191737 tcagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 14191784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 28142871 - 28142918
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  28142871 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 28142918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 49243634 - 49243584
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 425  Q
    |||||||||||||||  ||||| ||||||||||||||| || |||||||||    
T  49243634 cagggccgttcctagagttttacgggccttaggcatagtattaaaaagggc 49243584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 9467000 - 9467052
Alignment:
Q  373 ctcagggccgttcctagcattttaggggccttaggcatagaatgaaaaagggc 425  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  9467000 ctcagggccgttcctagcattttaggggccttagatatagaatgaaaaagggc 9467052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 33444114 - 33444066
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagg 423  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33444114 cagggccgttcctagcattttaggggccttagacatagaatgaaaaagg 33444066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 36641881 - 36641834
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  36641881 tcagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 36641834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 6024178 - 6024224
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||| ||||| |||||||||||||||  |||||||    
T  6024178 cagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 6024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 66879 - 66832
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaag 422  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  66879 cagggccgttcctagcattttaggggccttaggcatagaataaaaaag 66832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 32699319 - 32699270
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaaggg 424  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  32699319 caggaccgttcctagtattttaggggccttaggcatagaatgaaaaaggg 32699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 43323249 - 43323297
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaagg 423  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  43323249 cagggccgttcctagcattttaggggcctgaggtatagaatgaaaaagg 43323297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 38491716 - 38491672
Alignment:
Q  377 gggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||| ||| |||||||||||||||||  |||||||    
T  38491716 gggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 38491672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 40971782 - 40971736
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||    
T  40971782 cagggccgttcctagcattttacgggccttaggcataatatgaaaaa 40971736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 28517139 - 28517092
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  28517139 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 28517092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 6926981 - 6927027
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||| ||| |||||||||||||||||  |||||||    
T  6926981 cagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 6927027  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 12700786 - 12700747
Alignment:
Q  381 cgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  12700786 cgttcctagcattttaggagccttaggcata-aatgaaaaa 12700747  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 12246160 - 12246076
Alignment:
Q  119 aaaagagccaagccgattgttgtcactggccttagttctctccccctcataaacactgatcaaggcagaggattggttatcttca 203  Q
    |||||| ||||||  ||||||||||||||| || |||||||| ||||| |||||  | ||||||| |  ||||||||||||||||    
T  12246160 aaaagaaccaagcaaattgttgtcactggcttttgttctctcaccctcgtaaaccttaatcaaggaactggattggttatcttca 12246076  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 2566276 - 2566229
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  2566276 tcagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 2566229  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 374
Target Start/End: Original strand, 11999006 - 11999077
Alignment:
Q  303 ggagtaacatcgatcaacaccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 374  Q
    |||||||||||   ||||||||| ||||||||||||||||  || |||| |||||||||||| || ||||||    
T  11999006 ggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagct 11999077  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 45276925 - 45276972
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    ||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  45276925 tcagggccgttcctagcgtttaaggggccttaggcatagtttgaaaaa 45276972  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 16662545 - 16662491
Alignment:
Q  320 caccaagtttggaacattcttaatgtcatcacccaacaaagcagcctgcacagct 374  Q
    ||||||||||||||||| ||||||| | |||| ||||| |||||| |||||||||    
T  16662545 caccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagct 16662491  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 29303843 - 29303806
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatag 412  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  29303843 cagggccgttcctagcgtttaaggggccttaggcatag 29303806  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 4570 - 4616
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||  ||||| ||||||||||||||| ||||||||    
T  4570 cagggccgttcctagagttttacgggccttaggcatagtatgaaaaa 4616  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 26222364 - 26222318
Alignment:
Q  375 cagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||||||||||||| ||||| |||||||||||||||  |||||||    
T  26222364 cagggccgttcctagcgttttaagggccttaggcatagtttgaaaaa 26222318  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 33048686 - 33048736
Alignment:
Q  374 tcagggccgttcctagcattttaggggccttaggcatagaatgaaaaaggg 424  Q
    ||||||||||||||||  ||||| ||| ||||||||||| |||||||||||    
T  33048686 tcagggccgttcctagagttttacgggtcttaggcatagtatgaaaaaggg 33048736  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 21906737 - 21906689
Alignment:
Q  373 ctcagggccgttcctagcattttaggggccttaggcatagaatgaaaaa 421  Q
    |||||| |||||||||| |||||| ||||||||||||||  ||||||||    
T  21906737 ctcaggtccgttcctagaattttatgggccttaggcataatatgaaaaa 21906689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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