View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11976_low_9 (Length: 477)
Name: NF11976_low_9
Description: NF11976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11976_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 43050869 - 43051142
Alignment:
| Q |
1 |
aatcagatggctggactctgtgcgctgcgctttctggagcaggtcaatattatttttgctaattaattttacaactagtttatgttctctgagatcaaga |
100 |
Q |
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| T |
43050869 |
aatcagatggctggactctgtgcgctgcgctttctggagcaggtcaatattatttttgctaattaattttacaactagtttatgttctctgagatcaaga |
43050968 |
T |
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| Q |
101 |
tcaatataccatgtgcttaaaatctatagcttaaatatccctcatgttactgttagtttgtacagtttatataaagttggcccttgattgccgggtagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
43050969 |
tcaatataccatgtgcttaaaatctatagcttaaatatccctcgtgttactgttagtttgtacagtttatataaagttggcccttgattgctgagtagaa |
43051068 |
T |
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| Q |
201 |
ctaatatgtggttagttggtctaagtagtaaatatatgaaattatattatatgccgtgttaggattccgattaa |
274 |
Q |
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| T |
43051069 |
ctaatatgtggttagttggtctaagtagtaaatatatgaaattatattatatgccgtgttaggattccgattaa |
43051142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 43034892 - 43035146
Alignment:
| Q |
1 |
aatcagatggctggactctgtgcgctgcgctttctggagcaggtcaatattatttttgctaattaattttacaactagtttatgttctctgagatcaaga |
100 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| || |
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| T |
43034892 |
aatcagatggctggactctatgctctgcgctttctggagcaggtaaatattatttttgctatttaattt-acaactagtttatgttctg--------agt |
43034982 |
T |
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| Q |
101 |
tcaatataccatgtgcttaaaatctatagcttaaatatccctcatgttactgttagtttgtacagtttatataaagttggcccttgattgccgggtagaa |
200 |
Q |
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| T |
43034983 |
tgaatataccatgtgcttaatatctatagcttaaatttccctcgtgttcctgttagtttgtacagtttatataaagcaggcacttgattgtttagtagaa |
43035082 |
T |
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| Q |
201 |
ctaatatgtggttagttggtctaagtagtaaatatatgaaattatattatatgccgtgttaggattcc |
268 |
Q |
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| T |
43035083 |
ctaatatgtggttggttggtctaagtagtaaatatat----atatattttatgccgtgttaggattcc |
43035146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 356 - 464
Target Start/End: Original strand, 43051224 - 43051333
Alignment:
| Q |
356 |
cttccccttccattcctacagtttctactactt-aatttcttgttgtcatttttgactcattttccgtaatattcacatagagaataccgtctattaaat |
454 |
Q |
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| T |
43051224 |
cttccccttccattcctacagtttctactacttgaatttcttgttgtcatttttgactcattttccgtaatattcacatagagaataccgtctattaaat |
43051323 |
T |
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| Q |
455 |
tgtgtgcttc |
464 |
Q |
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|||||||||| |
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| T |
43051324 |
tgtgtgcttc |
43051333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 43035239 - 43035345
Alignment:
| Q |
356 |
cttccccttccattcctacagtttctactacttaa-tttcttgttgtcatttttgactcattttccgtaatattcacatagagaataccgtctattaaat |
454 |
Q |
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|||||| |||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
43035239 |
cttccctttccgttcctacagtttccactacttgactttcttgttgtcatttttgactcattttccgtaatattcacatagcgaataccgtcaattaaat |
43035338 |
T |
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| Q |
455 |
tgtgtgc |
461 |
Q |
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||||||| |
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| T |
43035339 |
tgtgtgc |
43035345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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