View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_high_12 (Length: 572)
Name: NF11977_high_12
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Original strand, 81305 - 81850
Alignment:
| Q |
11 |
tagggacaagaaatgcacaaaagcaatcaagaaatttcagacgaagttaaattttagctcttctctctgaagcttaaattatactttaatctcgtatttc |
110 |
Q |
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| T |
81305 |
tagggacaagaaatgcacaaaggcaatcaagaaatttcagacgaagttaaattttagctcttctctctgaa------attatactttaatctcgtatttc |
81398 |
T |
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| Q |
111 |
atgaatgaactttttagtggaggtcaaagattatgaacaagtctcatcttgacaattttatcttcttaacaactttcaatccataagtaactaaatttaa |
210 |
Q |
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| T |
81399 |
atgaatgaactttttagtggaggtcaaagattatgaacaagtctcatcttgacaattttatcttcttaacaactttcaatccataagtaactaaatttaa |
81498 |
T |
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| Q |
211 |
ataatctattattgattataagacttatgaagcttctagcacctattcgtggtgcctgtgtttgtagttcttttttctttaagtaaatgaagattgttgg |
310 |
Q |
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| T |
81499 |
gtaatctattattgattataagacttatgaagcttctagcacctattcgtggtgcctgtgtttgtagttcttttttctttaagtaaatgaagattgttgg |
81598 |
T |
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| Q |
311 |
ttga-------caccactttgagtgttgtaggttacggtaatctcgtgaagttttgtccaactataatttggatgaatccataaacagttttatgagaca |
403 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
81599 |
ttgacacttgacaccactttgagagttgtaggttacggtaatctcgtgaagttttgtccaactataatttggatgaatccataaacagttttatgagaca |
81698 |
T |
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| Q |
404 |
gacatgtcggccaaagtaactagagaagttcatattagcagaaagctaagttggctcttggcaccaaattaatatgcaatagatataattggaaaaatgg |
503 |
Q |
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| T |
81699 |
gacatgtcggccaaagtaactagagaagttcatattagcagaaagctaagttggctcttggcaccaaattaatatgcaatagatataattggaaaaatgg |
81798 |
T |
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| Q |
504 |
aagtcgagggaaatgaaattgataaagaaatgccattacaagaaagataaac |
555 |
Q |
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| T |
81799 |
aagtcgagggaaatgaaattgataaagaaatgccattacaagaaagataaac |
81850 |
T |
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