View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_high_16 (Length: 485)
Name: NF11977_high_16
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 2487285 - 2487737
Alignment:
| Q |
18 |
ttttttaggtacataccttggattaatttgatgagaggatttgggttcttcttcactcaaaattactagagcgcttctttcgtttttgacagaaaaaaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487285 |
ttttttaggtacataccttggattaatttgatgagtggatttgggttcttcttcactcaaaattactagagcgcttctttcgtttttgacagaaaaaaga |
2487384 |
T |
|
| Q |
118 |
atataggttgtttttgacgcatcgatgaatatatatataggttaaagtcttaaataactgcgtgccctagctgttacttgttttccggattttattttga |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2487385 |
atataggttgtttttgacgcatcgatgaatat--atataggttaaagtcttaaataactgcgtgccctagctgttacctgttttccggattttattttga |
2487482 |
T |
|
| Q |
218 |
aattttaatgatatcgcagccactcaaattcttaatatgtgtgctttacatccaacggctcttaaacttccatgtcaccaatcctagtgaaatcaattcc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487483 |
aattttaatgatatcgcagccactcaaattcttaatatgtgtgcattacatccaacggctcttaaacttccatgtcaccaatcctagtgaaatcaattcc |
2487582 |
T |
|
| Q |
318 |
aactaaacaaccaagtacttaacttcttcataaagaaacaaccaagtactactaccaatggttttctttacttcgtcttgcagtgtcgcgagcaattgag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487583 |
aactaaacaaccaagtacttaacttcttcataaagaaacaaccaag---tactaccaatggttttctttacttcgtcttgcagtgtcgcgagcaattgag |
2487679 |
T |
|
| Q |
418 |
tatccagccatcaactaaggaccatgacaacaccctcaaattcacccgatctcctatg |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2487680 |
tatccagccatcaactaaggaccatgacaacaccctcaaattcactcgatctcctatg |
2487737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 27089871 - 27090323
Alignment:
| Q |
18 |
ttttttaggtacataccttggattaatttgatgagaggatttgggttcttcttcactcaaaattactagagcgcttctttcgtttttgacagaaaaaaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27089871 |
ttttttaggtacataccttggattaatttgatgagtggatttgggttcttcttcactcaaaattactagagcgcttctttcgtttttgacagaaaaaaga |
27089970 |
T |
|
| Q |
118 |
atataggttgtttttgacgcatcgatgaatatatatataggttaaagtcttaaataactgcgtgccctagctgttacttgttttccggattttattttga |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27089971 |
atataggttgtttttgacgcatcgatgaatat--atataggttaaagtcttaaataactgcgtgccctagctgttacctgttttccggattttattttga |
27090068 |
T |
|
| Q |
218 |
aattttaatgatatcgcagccactcaaattcttaatatgtgtgctttacatccaacggctcttaaacttccatgtcaccaatcctagtgaaatcaattcc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090069 |
aattttaatgatatcgcagccactcaaattcttaatatgtgtgcattacatccaacggctcttaaacttccatgtcaccaatcctagtgaaatcaattcc |
27090168 |
T |
|
| Q |
318 |
aactaaacaaccaagtacttaacttcttcataaagaaacaaccaagtactactaccaatggttttctttacttcgtcttgcagtgtcgcgagcaattgag |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090169 |
aactaaacaaccaagtacttaacttcttcataaagaaacaaccaag---tactaccaatggttttctttacttcgtcttgcagtgtcgcgagcaattgag |
27090265 |
T |
|
| Q |
418 |
tatccagccatcaactaaggaccatgacaacaccctcaaattcacccgatctcctatg |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
27090266 |
tatccagccatcaactaaggaccatgacaacaccctcaaattcactcgatctcctatg |
27090323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 19168554 - 19168492
Alignment:
| Q |
257 |
tgtgctttacatccaacggctcttaaacttccatgtcaccaatcctagtgaaatcaattccaa |
319 |
Q |
| |
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||||| ||| ||||||||| | ||||||||||||||| |||||||||||||| ||| ||||| |
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| T |
19168554 |
tgtgcattaaatccaacggttgctaaacttccatgtcagcaatcctagtgaaaccaaatccaa |
19168492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 20501304 - 20501252
Alignment:
| Q |
267 |
atccaacggctcttaaacttccatgtcaccaatcctagtgaaatcaattccaa |
319 |
Q |
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||||||||| | ||||||||||||||| |||||||||||||| ||| ||||| |
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| T |
20501304 |
atccaacggttgctaaacttccatgtcagcaatcctagtgaaaccaaatccaa |
20501252 |
T |
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