View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11977_high_17 (Length: 474)
Name: NF11977_high_17
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 152 - 460
Target Start/End: Original strand, 7972160 - 7972470
Alignment:
| Q |
152 |
attatgagatacaaccaagacaccgcacacaaaatgaataaacttacctcaaggaactaattcataaatcaacaaatatccaagcagaaatccttgatat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7972160 |
attatgagatacaaccaagacaccgcaca--aaatgaataaacttacctcaaggaactaattcataaatcaacaaatatccaagcagaaatccttgatat |
7972257 |
T |
|
| Q |
252 |
ttgcttttctgtaaatataaagaattaacttataagtttgataattggattagtttacaagtgttttagat-aaattctatgcctttggtaacaaagttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7972258 |
ttgcttttctgtaaatataaagaattaatttataagtttgataattggattagtttacaattgttttagataaaattctatgcctttggtaacaaagttt |
7972357 |
T |
|
| Q |
351 |
ttctattttacaaacactcaaagctt---ccgccacagcaccaatgattcatcatttcaatttgcttcaatttcacacattctcattctccacctcaacc |
447 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7972358 |
ttctattttacaaacactcaaagcttccgccgccacagcaccaatgattcatcatttcaatttgcttcaatttcacacattctcattctccatctcaacc |
7972457 |
T |
|
| Q |
448 |
acaacctaattca |
460 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7972458 |
acaacctaattca |
7972470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 7972769 - 7972813
Alignment:
| Q |
412 |
cttcaatttcacacattctcattctccacctcaaccacaacctaa |
456 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
7972769 |
cttcaaattcacacattctcattctccatctccacctcaacctaa |
7972813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University