View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_high_20 (Length: 440)
Name: NF11977_high_20
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 38485014 - 38485419
Alignment:
| Q |
16 |
cacatgtattaccccttagcccccgataacctaatcaagatcacatggcatcccatcgatcacagttgatattccgcaactaccaaacaattttcacaac |
115 |
Q |
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| T |
38485014 |
cacatgtattaccccttagcccccaataacctaatcaagatcacatggcatcccatcgatcacagttgatattccgcaactaccaaacaattttcacaac |
38485113 |
T |
|
| Q |
116 |
ccacctcatttgtaaagtgacttgagtgttggagtgtgacggacattctcacaacaatgtgatatgtctccttcatnnnnnnnnnnnnnnnnntgtaata |
215 |
Q |
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| T |
38485114 |
ccacctcatttgcaaagtgacttgagggttggagtgtgacggacattctcataacaatgtgatatgtctccttcat---------aaattaaatgtgata |
38485204 |
T |
|
| Q |
216 |
tgtcatcgtcaaacttgtgatccacaccaaatgaccggatcatgtttaaacatagattgcaaaatagacaagttactaagtcgtagagagtgtataatta |
315 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38485205 |
tgtcatcgtcaaatttgtgatccacatcaaatgaccggatcatgtttaaacatagattgcaaaatagacaagttgttaagtcgtagagagtgtataatta |
38485304 |
T |
|
| Q |
316 |
aagttgaggattgatgtaataatttacaatttttaatatacctc-------cttgtgaggattggtttgtaatgtgaaaacttcggtagcgcgcatttca |
408 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||| |
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| T |
38485305 |
aggttgaggattgatgtaataatttacaatttttaatatacctccttgtgacttgtgaggattggtttgtaacgtgaaaacttcgata--gcgcatttca |
38485402 |
T |
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| Q |
409 |
aatgtcaaaatcgttct |
425 |
Q |
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| T |
38485403 |
aatgtcaaaatcgttct |
38485419 |
T |
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