View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_high_21 (Length: 435)

Name: NF11977_high_21
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_high_21
NF11977_high_21
[»] chr1 (38 HSPs)
chr1 (18-282)||(37925677-37925950)
chr1 (352-429)||(37925954-37926031)
chr1 (111-179)||(24419525-24419593)
chr1 (126-180)||(14231125-14231179)
chr1 (130-180)||(24419612-24419662)
chr1 (111-180)||(8174174-8174243)
chr1 (111-176)||(14240804-14240869)
chr1 (125-174)||(39498774-39498823)
chr1 (130-178)||(882937-882985)
chr1 (132-180)||(10325362-10325410)
chr1 (130-178)||(14231057-14231105)
chr1 (126-178)||(29853244-29853296)
chr1 (111-178)||(457653-457720)
chr1 (125-180)||(1609970-1610025)
chr1 (131-178)||(10332049-10332096)
chr1 (113-168)||(15241120-15241175)
chr1 (111-178)||(38636283-38636350)
chr1 (130-181)||(49166686-49166737)
chr1 (130-177)||(51171338-51171385)
chr1 (125-178)||(1226741-1226795)
chr1 (111-181)||(5368767-5368836)
chr1 (113-179)||(5368854-5368920)
chr1 (114-180)||(29853159-29853225)
chr1 (130-180)||(35489276-35489326)
chr1 (114-156)||(36618810-36618852)
chr1 (134-180)||(47154728-47154774)
chr1 (130-175)||(5700118-5700163)
chr1 (125-178)||(11016670-11016723)
chr1 (113-178)||(21945052-21945117)
chr1 (113-178)||(30412591-30412656)
chr1 (112-181)||(41944763-41944832)
chr1 (130-178)||(4604919-4604967)
chr1 (113-181)||(8900788-8900856)
chr1 (111-174)||(27634355-27634419)
chr1 (133-181)||(34890200-34890248)
chr1 (140-180)||(44661788-44661828)
chr1 (132-180)||(46508157-46508205)
chr1 (125-180)||(50403095-50403151)
[»] chr8 (14 HSPs)
chr8 (113-179)||(18147805-18147871)
chr8 (130-180)||(27988090-27988140)
chr8 (130-180)||(28045392-28045442)
chr8 (130-176)||(33072628-33072674)
chr8 (114-180)||(40737901-40737967)
chr8 (123-180)||(33836810-33836867)
chr8 (127-179)||(6649153-6649205)
chr8 (126-180)||(12328781-12328835)
chr8 (130-179)||(6590863-6590912)
chr8 (113-181)||(44329235-44329304)
chr8 (125-180)||(8168912-8168968)
chr8 (132-180)||(27976805-27976853)
chr8 (132-180)||(28034074-28034122)
chr8 (130-178)||(30557009-30557057)
[»] chr5 (18 HSPs)
chr5 (126-179)||(28351024-28351077)
chr5 (128-179)||(35463962-35464013)
chr5 (112-179)||(28499775-28499842)
chr5 (130-182)||(16829214-16829265)
chr5 (125-180)||(18200667-18200722)
chr5 (131-182)||(34445273-34445324)
chr5 (113-178)||(1249188-1249254)
chr5 (130-180)||(7065664-7065714)
chr5 (114-180)||(20269438-20269503)
chr5 (130-175)||(7065596-7065641)
chr5 (113-178)||(19087772-19087837)
chr5 (125-178)||(43221642-43221695)
chr5 (114-178)||(8850344-8850408)
chr5 (134-178)||(14958924-14958968)
chr5 (126-180)||(16829280-16829331)
chr5 (130-178)||(18550988-18551036)
chr5 (130-178)||(19087858-19087906)
chr5 (125-181)||(35464030-35464086)
[»] chr2 (14 HSPs)
chr2 (120-180)||(25997318-25997378)
chr2 (130-179)||(27279498-27279547)
chr2 (126-179)||(41221709-41221762)
chr2 (111-179)||(41517444-41517512)
chr2 (130-180)||(30429080-30429130)
chr2 (130-179)||(9733546-9733595)
chr2 (130-180)||(11021135-11021185)
chr2 (114-155)||(27279584-27279625)
chr2 (114-155)||(27504698-27504739)
chr2 (130-178)||(472423-472471)
chr2 (130-182)||(30429145-30429196)
chr2 (130-178)||(31719192-31719240)
chr2 (126-178)||(33853837-33853889)
chr2 (150-182)||(41105144-41105176)
[»] chr7 (15 HSPs)
chr7 (123-182)||(17801459-17801518)
chr7 (111-177)||(3094417-3094483)
chr7 (126-180)||(29229751-29229804)
chr7 (114-178)||(35985255-35985319)
chr7 (114-178)||(36006663-36006727)
chr7 (112-178)||(2635678-2635744)
chr7 (125-174)||(3094337-3094387)
chr7 (125-178)||(7307704-7307757)
chr7 (125-174)||(16970313-16970362)
chr7 (113-178)||(35274493-35274558)
chr7 (130-178)||(12423726-12423774)
chr7 (130-174)||(19509350-19509393)
chr7 (126-178)||(39751072-39751124)
chr7 (126-178)||(42926992-42927044)
chr7 (125-176)||(45444724-45444776)
[»] chr6 (9 HSPs)
chr6 (126-181)||(24252959-24253014)
chr6 (114-173)||(29400662-29400721)
chr6 (114-178)||(3846426-3846490)
chr6 (125-178)||(2271206-2271259)
chr6 (112-168)||(7055649-7055705)
chr6 (125-179)||(5069946-5070000)
chr6 (113-174)||(32650090-32650151)
chr6 (130-174)||(674135-674179)
chr6 (130-178)||(31159088-31159136)
[»] chr4 (22 HSPs)
chr4 (125-179)||(20291862-20291916)
chr4 (112-181)||(6371993-6372062)
chr4 (130-180)||(7277427-7277478)
chr4 (109-175)||(33508522-33508588)
chr4 (125-178)||(33004177-33004230)
chr4 (127-175)||(10304665-10304713)
chr4 (126-178)||(32125419-32125471)
chr4 (121-180)||(20291784-20291843)
chr4 (125-178)||(22048822-22048876)
chr4 (130-180)||(23673435-23673485)
chr4 (130-179)||(10065146-10065195)
chr4 (126-182)||(15725551-15725608)
chr4 (125-178)||(33508613-33508666)
chr4 (113-178)||(38562120-38562185)
chr4 (112-181)||(52840261-52840330)
chr4 (130-178)||(6371926-6371974)
chr4 (113-181)||(10065060-10065128)
chr4 (126-178)||(15604540-15604592)
chr4 (130-178)||(23614456-23614504)
chr4 (130-174)||(30920794-30920838)
chr4 (126-178)||(33004251-33004303)
chr4 (130-178)||(39993123-39993171)
[»] chr3 (14 HSPs)
chr3 (130-184)||(26601974-26602028)
chr3 (113-175)||(28732543-28732605)
chr3 (113-181)||(21150136-21150204)
chr3 (130-178)||(25108987-25109035)
chr3 (130-175)||(16867629-16867674)
chr3 (113-174)||(27786541-27786602)
chr3 (113-181)||(16867696-16867764)
chr3 (112-180)||(30122034-30122102)
chr3 (130-178)||(55121185-55121233)
chr3 (130-180)||(26331229-26331279)
chr3 (130-176)||(26331299-26331345)
chr3 (131-181)||(37914606-37914656)
chr3 (125-178)||(50561064-50561117)
chr3 (132-180)||(50626768-50626816)
[»] scaffold0003 (1 HSPs)
scaffold0003 (113-180)||(320750-320817)
[»] scaffold0514 (1 HSPs)
scaffold0514 (125-179)||(5826-5880)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 37925677 - 37925950
Alignment:
Q  18 cttctttcatagattctggcaaattctctaagaacagagaatcttcttttgtcgatccacttagatcaagattttggttatgctgaacaagacatatact 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37925677 cttctttcatagattctggcaaattctctaagaaaagagaatcttcttttgtcgatccacttagatcaagattttggttatgctgaacaagacatatact 37925776  T
Q  118 cccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatctagccgattgaatatattagtt---------atctaaa 208  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||         |||||||    
T  37925777 cccttcaatcatatttataaacaaaaaagaattttttatgttcattgaataactaatgtatctagccgattggatatattagttatttaataaatctaaa 37925876  T
Q  209 aagtcacttttt----cttataaatacaactggagggagggagtgatttttaacgtatcaaaggatctatatgttata 282  Q
    ||||   |||||    |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  37925877 aagttgtttttttttgcttataaatacaact----ggagggagtgatttttaacgtatcaaaggatctatatgttata 37925950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 37925954 - 37926031
Alignment:
Q  352 agtaaattgaaaatctattccttagaaaatgacacgttttgtgaattttgtaacataatggctgctgctgtttctctg 429  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37925954 agtaaattgaaactctattccttagaaaatgacacgttttgtgaattttgtaacataatggctgctgctgtttctctg 37926031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 24419525 - 24419593
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||||||||| |  ||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  24419525 atatactccctccggtcacatttataagcaaaaaagaactttttagattcattgaagaactaatgtatc 24419593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 14231179 - 14231125
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||| |||| | ||| ||||| ||||||||||||||||||||||||    
T  14231179 tcatatttataaggaaaacacaacattttaggttcattgaataactaatgtatct 14231125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 24419662 - 24419612
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||| ||||||||| || |||||||||| ||||||||||    
T  24419662 atttataagcaaaaaacaactttttaggtacattgaataattaatgtatct 24419612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 8174243 - 8174174
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||| |  ||| |||||||||||||| | |||||||||| |||||||||| | ||||||||||    
T  8174243 atatactccctccggtcacatttataagcaaaacacaactttttatattcattgaatgattaatgtatct 8174174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 14240869 - 14240804
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgt 176  Q
    |||||||||||  | |||||||||||||||||  | ||| ||||| ||||||||||||||||||||    
T  14240869 atatactccctcgagtcatatttataagcaaagcacaacattttaggttcattgaataactaatgt 14240804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 39498774 - 39498823
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaat 174  Q
    ||||||||||||||||||| | |||||||||| |||||| ||||||||||    
T  39498774 atcatatttataagcaaaacaaaactttttatattcatttaataactaat 39498823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 882937 - 882985
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||| |||| | ||||||||| ||||||||||||||||||||||    
T  882937 atttataagtaaaatataactttttaggttcattgaataactaatgtat 882985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 10325410 - 10325362
Alignment:
Q  132 ttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||| |||||| |||||||||| |||||| ||||||||||||||||    
T  10325410 ttataaggaaaaaataactttttatattcattaaataactaatgtatct 10325362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 14231057 - 14231105
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||||||| ||||||||| ||||||||||| | ||||||||    
T  14231057 atttataagcaaaaaataactttttacgttcattgaatgattaatgtat 14231105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 29853296 - 29853244
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||| |||||  ||||||||||||||||| ||||| ||||||||    
T  29853296 tcatatttataagtaaaaattaactttttatgttcatttaataaataatgtat 29853244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 457720 - 457653
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||| |  ||| ||||||||||||||| | |||||||| ||||||||||||  ||||||||    
T  457720 atatactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtat 457653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 1609970 - 1610025
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||| |||||||||||||||| |||||||||  | |||||||||| ||||||||||    
T  1609970 atcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatct 1610025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 10332049 - 10332096
Alignment:
Q  131 tttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||| |||||||||  |||| ||||||||||||||||    
T  10332049 tttataagcaaaaaacaactttttaaattcaatgaataactaatgtat 10332096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 15241120 - 15241175
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaata 168  Q
    ||||||||| || ||| ||||||||||||||||| | |||||| ||||||||||||    
T  15241120 atactccctccagtcacatttataagcaaaaaagtattttttaggttcattgaata 15241175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 38636350 - 38636283
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||| |  ||| ||||| |||||||||| |||||||||  || ||||||||||||||||||    
T  38636350 atatactccctccggtcacatttaaaagcaaaaaacaactttttagattgattgaataactaatgtat 38636283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 49166737 - 49166686
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    |||||||||||||||| |||||||||  | |||||||||| |||||||||||    
T  49166737 atttataagcaaaaaacaactttttagttacattgaataattaatgtatcta 49166686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 51171385 - 51171338
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgta 177  Q
    ||||||||| |||||| ||||||||| ||||||| |||||||||||||    
T  51171385 atttataagtaaaaaataactttttaagttcattaaataactaatgta 51171338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 1226795 - 1226741
Alignment:
Q  125 atcatatttataagcaaaaaag-aactttttatgttcattgaataactaatgtat 178  Q
    |||| ||||||||||||||||  || |||||| ||||||||||||||||||||||    
T  1226795 atcacatttataagcaaaaaaataattttttaagttcattgaataactaatgtat 1226741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 5368767 - 5368836
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||||||| | |||| |||||||||||||||| ||| |||||||| |||  ||||| |||||||||||    
T  5368767 atatactccctccgatcacatttataagcaaaaaataac-ttttatgtacatccaataattaatgtatcta 5368836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 5368920 - 5368854
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||||||| |  |||||||||||||||||||  |||||||||  | |||||||||| |||||||||    
T  5368920 atactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatc 5368854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 29853159 - 29853225
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||| | |||| ||||||||||||||   ||| ||||| ||||||| ||||||||||||||||    
T  29853159 tactccctccgatcacatttataagcaaaatgtaacattttaggttcattcaataactaatgtatct 29853225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 35489326 - 35489276
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||||||  ||||||||||| |||||||||| ||||| ||||    
T  35489326 atttataagcaaaaaatgactttttatgtacattgaataattaatgaatct 35489276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 36618810 - 36618852
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttat 156  Q
    ||||||||||  |||||||||||||||||||| ||||||||||    
T  36618810 tactcccttccgtcatatttataagcaaaaaacaactttttat 36618852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 47154774 - 47154728
Alignment:
Q  134 ataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||| ||||||||| ||||||| ||||| ||||||||||    
T  47154774 ataagcaaaaaacaactttttaggttcatttaataaataatgtatct 47154728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 5700163 - 5700118
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatg 175  Q
    |||||||||||||||| ||||||||| || |||||||||| |||||    
T  5700163 atttataagcaaaaaacaactttttaagtacattgaataattaatg 5700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 11016723 - 11016670
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||| |||||||| ||||||  ||||||||| ||| ||||||||||||||||||    
T  11016723 atcacatttataaacaaaaatcaactttttaggtttattgaataactaatgtat 11016670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 21945052 - 21945117
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||  |||| ||||||||| ||||||  ||||||||  ||||||||||| |||||||||    
T  21945052 atactccctttgatcacatttataagtaaaaaatcactttttagattcattgaatacctaatgtat 21945117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 30412591 - 30412656
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||| |  ||| ||||||||||||||| | |||||||| ||||||||||||  ||||||||    
T  30412591 atactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtat 30412656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 41944763 - 41944832
Alignment:
Q  112 tatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||||||||  ||| |||||||||||||||| ||||||||| ||  ||  ||||| |||||||||||    
T  41944763 tatactcccttcggtcacatttataagcaaaaaacaactttttaggtatatccaataattaatgtatcta 41944832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 4604967 - 4604919
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||||  |||||||| ||| |||||||| |||||||||    
T  4604967 atttataagcaaaaaatcactttttaggtttattgaatacctaatgtat 4604919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 8900788 - 8900856
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||| |||  ||| ||||||||| || ||| ||||||||| || |||||||||| |||||||||||    
T  8900788 atactccattcggtcacatttataagtaataaacaactttttaggtacattgaataattaatgtatcta 8900856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 27634419 - 27634355
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactt-tttatgttcattgaataactaat 174  Q
    ||||||||| ||| | |||||||||||| |||||| ||||| ||||  |||||||||||||||||    
T  27634419 atatactcctttcgaacatatttataagtaaaaaataacttctttaacttcattgaataactaat 27634355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 34890200 - 34890248
Alignment:
Q  133 tataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||||||||| |||||||||  | ||||||||||||||| ||||||    
T  34890200 tataagcaaaaaacaactttttagatacattgaataactaatatatcta 34890248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 44661788 - 44661828
Alignment:
Q  140 aaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||| || |||||| ||||||||||||||||||||||||    
T  44661788 aaaaaacaattttttaagttcattgaataactaatgtatct 44661828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 46508157 - 46508205
Alignment:
Q  132 ttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||| ||||||| |  |||||||||||||| ||||||||    
T  46508157 ttataagcaaaaaaaaacttttcagattcattgaataacttatgtatct 46508205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 50403095 - 50403151
Alignment:
Q  125 atcatatttataagcaaaaa-agaactttttatgttcattgaataactaatgtatct 180  Q
    |||| ||||||||||||||| | |||||||||  || ||||||||||||||||||||    
T  50403095 atcacatttataagcaaaaacacaactttttaaatttattgaataactaatgtatct 50403151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 18147805 - 18147871
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||| ||||| |||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  18147805 atacttccttcgatcacatttatatgcaaaaaaaaactttttaggttcattgaataactaatgtatc 18147871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 27988090 - 27988140
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  27988090 atttataagcaaaaaacaactttttaagttcattgaataagtaatgtatct 27988140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 28045392 - 28045442
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  28045392 atttataagcaaaaaacaactttttaagttcattgaataagtaatgtatct 28045442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 33072628 - 33072674
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgt 176  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  33072628 atttacaagcaaaaaataactttttaggttcattgaataactaatgt 33072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 40737967 - 40737901
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||| || |||||||||||||||||||| |  |||||| || |||||||||| ||||||||||    
T  40737967 tactccctccagtcatatttataagcaaaaaatagttttttaggtacattgaataattaatgtatct 40737901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 33836810 - 33836867
Alignment:
Q  123 caatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||| |||||| ||||||||||  ||||||||||| |||| |||||    
T  33836810 caatcatatttataagtaaaaaacaactttttatagtcattgaataattaatatatct 33836867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 6649205 - 6649153
Alignment:
Q  127 catatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||||||||||||||||||  |||||||| || |||||||||| |||||||||    
T  6649205 catatttataagcaaaaaatgactttttaggtacattgaataattaatgtatc 6649153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 12328835 - 12328781
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||| ||||||  |||||||||  | |||||||||||||||||||||    
T  12328835 tcatatttataaacaaaaattaactttttaaatccattgaataactaatgtatct 12328781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 6590912 - 6590863
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||||||||||||||  |||||||| || |||||||||| |||||||||    
T  6590912 atttataagcaaaaaattactttttaggtacattgaataattaatgtatc 6590863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 44329304 - 44329235
Alignment:
Q  113 atactcccttcaatcatatttataagcaa-aaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||||| || |||||||||||||||| |||| ||||||||| || |||  ||||| |||||||||||    
T  44329304 atactccctccagtcatatttataagcaaaaaaacaactttttaggtacatccaataattaatgtatcta 44329235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 8168912 - 8168968
Alignment:
Q  125 atcatatttataagc-aaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||||| |||||| |  ||||||||| |||||||||| ||||||||||    
T  8168912 atcatatttataagcaaaaaaacagttttttatgtacattgaataattaatgtatct 8168968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 27976853 - 27976805
Alignment:
Q  132 ttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||| || |||||||  |||||||||||| ||||||||||    
T  27976853 ttataagcaaaaatgatctttttagattcattgaataattaatgtatct 27976805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 28034122 - 28034074
Alignment:
Q  132 ttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||| || |||||||  |||||||||||| ||||||||||    
T  28034122 ttataagcaaaaatgatctttttagattcattgaataattaatgtatct 28034074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 30557057 - 30557009
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||| | ||||| ||||||||| |||||||||||||| |||||||    
T  30557057 atttataaacgaaaaacaactttttaggttcattgaataaccaatgtat 30557009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 28351077 - 28351024
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  28351077 tcatatttataagcaaaaaacaactttttagattcattgaataactaatgtatc 28351024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 35463962 - 35464013
Alignment:
Q  128 atatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  35463962 atatttataagcaaaaaataattttttaggttcattgaataactaatgtatc 35464013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 28499775 - 28499842
Alignment:
Q  112 tatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||||||||| |  ||| |||||||||||||||| || ||||||  ||||||||||||||||||||||    
T  28499775 tatactccctccggtcacatttataagcaaaaaataattttttagattcattgaataactaatgtatc 28499842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 16829214 - 16829265
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatctag 182  Q
    |||||||||||||||  ||||||||| |||||||||||| |||||||||||||    
T  16829214 atttataagcaaaaat-aactttttaagttcattgaatatctaatgtatctag 16829265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 18200667 - 18200722
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||| |||||||||||||||  || |||||| ||| ||||||||||||||||||||    
T  18200667 atcacatttataagcaaaaattaattttttaagtttattgaataactaatgtatct 18200722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 34445273 - 34445324
Alignment:
Q  131 tttataagcaaaaaagaactttttatgttcattgaataactaatgtatctag 182  Q
    ||||||||||||||| ||||||||| |||||| |||||| ||| ||||||||    
T  34445273 tttataagcaaaaaacaactttttaggttcatggaataattaaggtatctag 34445324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 1249254 - 1249188
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaa-ctttttatgttcattgaataactaatgtat 178  Q
    ||||||| |||||| |||||||||||||||||| ||  ||||||  || ||||||||||||||||||    
T  1249254 atactccattcaattatatttataagcaaaaaacaatttttttagatttattgaataactaatgtat 1249188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 7065714 - 7065664
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||  |||||||||  |||||||||||| ||||||||||    
T  7065714 atttataagcaaaaatcaactttttaaattcattgaataattaatgtatct 7065664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 20269438 - 20269503
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||||||||||||||| |||||| |||||||||  |  ||||||||| | ||||||||    
T  20269438 tactcccttcaatcatatttataag-aaaaaacaactttttagatatattgaataattgatgtatct 20269503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 7065596 - 7065641
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatg 175  Q
    |||||||| |||||||||||||||||  | ||||||||||||||||    
T  7065596 atttataaacaaaaaagaactttttagatacattgaataactaatg 7065641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 19087772 - 19087837
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||  ||| ||||||||||||||||  | ||||||| |||||||||||  ||||||||    
T  19087772 atactcccttcggtcacatttataagcaaaaaaatattttttatattcattgaatacttaatgtat 19087837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 43221695 - 43221642
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||| |||||||||||||||| ||||||||| ||| |||||| || ||||||||    
T  43221695 atcacatttataagcaaaaaataactttttaggtttattgaaaaattaatgtat 43221642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 8850408 - 8850344
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||| | |||| ||||||||| ||||| | |||||||| ||||||||||||  ||||||||    
T  8850408 tactccctccgatcacatttataagtaaaaatgtactttttaggttcattgaatacataatgtat 8850344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 14958968 - 14958924
Alignment:
Q  134 ataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||| | |||||||  |||||||||||||||||||||    
T  14958968 ataagcaaaaaacatctttttaaattcattgaataactaatgtat 14958924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 16829331 - 16829280
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||||||||||    |||||| |||||| |||||||||||||||||    
T  16829331 tcatatttataagcaaaaaat---tttttaggttcatcgaataactaatgtatct 16829280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 18550988 - 18551036
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||||| | |||| ||||  |||||||||||||||||||||    
T  18550988 atttataagcaaaacacaactgtttagattcattgaataactaatgtat 18551036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 19087906 - 19087858
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||| | |||||||| ||||||||||||  ||||||||    
T  19087906 atttataagcaaaaatgtactttttaggttcattgaatacataatgtat 19087858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 35464086 - 35464030
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    |||||||||||||||||||   ||||||||| |||| |||| || ||||||||||||    
T  35464086 atcatatttataagcaaaaggcaactttttaggttctttgagtagctaatgtatcta 35464030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 25997318 - 25997378
Alignment:
Q  120 cttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||| |||||||||||||||||||   || |||||||||||||||||||||||||||||||    
T  25997318 cttcgatcatatttataagcaaaatgtaattttttatgttcattgaataactaatgtatct 25997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 27279498 - 27279547
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||    
T  27279498 atttataagcaaaaaataattttttaggttcattgaataactaatgtatc 27279547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 41221762 - 41221709
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||||||||||| |||||| || |||||| |||||||||||||||||||||||    
T  41221762 tcatatttataagtaaaaaataaatttttaggttcattgaataactaatgtatc 41221709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 41517512 - 41517444
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||||||||| |  ||| |||||||||||||||| ||||||||| || |||||||||| |||||||||    
T  41517512 atatactccctccggtcacatttataagcaaaaaataactttttaagtacattgaataattaatgtatc 41517444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 30429080 - 30429130
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||| ||||||||| ||||||| ||||| ||||||||||    
T  30429080 atttataagcaaaaaacaactttttaggttcattcaataattaatgtatct 30429130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 9733595 - 9733546
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||||||| ||||||| || |||||| |||||||||||||||||||||||    
T  9733595 atttataaacaaaaaacaattttttaggttcattgaataactaatgtatc 9733546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 11021185 - 11021135
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||  ||||| |||||||||| ||||||| |||||||||||||||    
T  11021185 atttataagggaaaaacaactttttattttcattggataactaatgtatct 11021135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 27279625 - 27279584
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaacttttta 155  Q
    ||||||||||  |||||||||||||||||||| |||||||||    
T  27279625 tactcccttcggtcatatttataagcaaaaaacaacttttta 27279584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 27504698 - 27504739
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaacttttta 155  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  27504698 tactcccttcaatcacatttataagcaaaaaatcacttttta 27504739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 472423 - 472471
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||| ||||| | ||||||||| ||| ||||||||||||||||||    
T  472423 atttataaacaaaatataactttttaggtttattgaataactaatgtat 472471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 30429196 - 30429145
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatctag 182  Q
    |||||||||||||||| || | |||| ||| ||||||||||||||||||||||    
T  30429196 atttataagcaaaaaa-aattgtttaggtttattgaataactaatgtatctag 30429145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 31719192 - 31719240
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||| |||||| |||||||||  ||||||||||||| |||||||    
T  31719192 atttataagtaaaaaacaactttttagattcattgaataacaaatgtat 31719240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 33853837 - 33853889
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||| |||||| | |||||||| ||||||||||||  ||||||||    
T  33853837 tcatatttataaacaaaaatgtactttttaggttcattgaatacataatgtat 33853889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 41105176 - 41105144
Alignment:
Q  150 tttttatgttcattgaataactaatgtatctag 182  Q
    |||||||||||||||||||| ||||||||||||    
T  41105176 tttttatgttcattgaataattaatgtatctag 41105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 17801518 - 17801459
Alignment:
Q  123 caatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatctag 182  Q
    ||||||||||||||| ||||||| |||||||||  |||||||||||| ||||||||||||    
T  17801518 caatcatatttataatcaaaaaacaactttttagattcattgaataattaatgtatctag 17801459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 3094483 - 3094417
Alignment:
Q  111 atatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgta 177  Q
    ||||||||||| | |||| ||||||||| |||||| ||||||| | |||||||||||||||||||||    
T  3094483 atatactccctccgatcacatttataagtaaaaaataacttttaaggttcattgaataactaatgta 3094417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 29229804 - 29229751
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  29229804 tcatatttataagcaaaaac-aactttttaggttcattgaataactaatgtatct 29229751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 35985255 - 35985319
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||| ||| |||| |||||||||||||| | |||||||||  || ||||||||||||||||||    
T  35985255 tactcctttcgatcacatttataagcaaaatacaactttttagattaattgaataactaatgtat 35985319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 36006663 - 36006727
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||| ||| |||| |||||||||||||| | |||||||||  || ||||||||||||||||||    
T  36006663 tactcctttcgatcacatttataagcaaaatacaactttttagattaattgaataactaatgtat 36006727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 2635744 - 2635678
Alignment:
Q  112 tatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||  ||| |||||||||||||| |||||| || ||||||  | |||||||||||||||||||    
T  2635744 tatactcatttcgatcatatttataagtaaaaaacaattttttaaatacattgaataactaatgtat 2635678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 3094337 - 3094387
Alignment:
Q  125 atcatatttataagcaaaaaag-aactttttatgttcattgaataactaat 174  Q
    |||||||||||||||||||||  ||||||||| ||||| ||||||||||||    
T  3094337 atcatatttataagcaaaaaaacaactttttaggttcactgaataactaat 3094387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 7307704 - 7307757
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||| |||||||||||||| | || |||||| |||||||||||||| |||||||    
T  7307704 atcacatttataagcaaaacacaattttttaggttcattgaataacgaatgtat 7307757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 16970362 - 16970313
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaat 174  Q
    ||||||||||||| | |||||  |||||||| ||||||||||||||||||    
T  16970362 atcatatttataaactaaaaactactttttaagttcattgaataactaat 16970313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 35274558 - 35274493
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||| |  ||| ||||||||||||||| | |||||||| ||||||||||||  ||||||||    
T  35274558 atactccctccggtcacatttataagcaaaaatgcactttttaggttcattgaatacataatgtat 35274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 12423774 - 12423726
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||| | |||||||| ||||||||||||  ||||||||    
T  12423774 atttataagcaaaaatgtactttttaggttcattgaatacataatgtat 12423726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 19509393 - 19509350
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaat 174  Q
    |||||||||||||||| ||||||||| || |||||||||||||||    
T  19509393 atttataagcaaaaaa-aactttttaggtacattgaataactaat 19509350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 39751072 - 39751124
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||| |||||| |||||||||  |||||| |||| |||||||||    
T  39751072 tcatatttataagtaaaaaacaactttttagattcattaaatatctaatgtat 39751124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 42926992 - 42927044
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||| ||||||  ||||| |||  |||||||||||||||||||||    
T  42926992 tcatatttataaacaaaaatcaacttcttagattcattgaataactaatgtat 42927044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 45444724 - 45444776
Alignment:
Q  125 atcatatttataagcaaaaaag-aactttttatgttcattgaataactaatgt 176  Q
    |||| ||||||||||||||||  ||||||||| ||| ||||||||||||||||    
T  45444724 atcacatttataagcaaaaaaacaactttttaagtttattgaataactaatgt 45444776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 24253014 - 24252959
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    |||||||||||||||||||| ||||||||| || |||||||||| |||||||||||    
T  24253014 tcatatttataagcaaaaaataactttttaggtacattgaataattaatgtatcta 24252959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 29400662 - 29400721
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaa 173  Q
    |||||||| ||||||||||||||| ||||||| ||||||||| || ||||||||||||||    
T  29400662 tactccctccaatcatatttataaacaaaaaacaactttttaagtacattgaataactaa 29400721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 3846426 - 3846490
Alignment:
Q  114 tactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||  ||| |||||||||||||||| || |||||| ||||||||||||| ||||||||    
T  3846426 tactcccttcggtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtat 3846490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 2271259 - 2271206
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||| |||||||||||||||| |||||||||  ||||||||| |||||||||||    
T  2271259 atcacatttataagcaaaaaataactttttagattcattgaacaactaatgtat 2271206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 7055705 - 7055649
Alignment:
Q  112 tatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaata 168  Q
    |||||||||| | |||| ||||||||||||||| | |||||||| ||||||||||||    
T  7055705 tatactccctccgatcacatttataagcaaaaatgtactttttaggttcattgaata 7055649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 5069946 - 5070000
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||| |||||||||||||||| |||||||||  | |||||||||| |||||||||    
T  5069946 atcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatc 5070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 32650090 - 32650151
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaat 174  Q
    ||||||||| ||||||||||||||||||||| | || ||||||  || |||||||| |||||    
T  32650090 atactccctccaatcatatttataagcaaaacataattttttagatttattgaatacctaat 32650151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 674179 - 674135
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaat 174  Q
    |||||||||||||||| || ||||||  |||||||||||||||||    
T  674179 atttataagcaaaaaacaattttttagattcattgaataactaat 674135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 31159088 - 31159136
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||| |||||| |  |||||||||||||||||||| ||||||||    
T  31159088 atttataagtaaaaaatacatttttatgttcattgaataattaatgtat 31159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 20291916 - 20291862
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||||||||||||||||||| |||||||||  || |||||||||||||||||||    
T  20291916 atcatatttataagcaaaaaataactttttagatttattgaataactaatgtatc 20291862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 6372062 - 6371993
Alignment:
Q  112 tatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    |||||||| | || |||||||||||||||||||| || |||||| || |||| |||||||||||||||||    
T  6372062 tatactccttccagtcatatttataagcaaaaaacaattttttaggtacatttaataactaatgtatcta 6371993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 7277427 - 7277478
Alignment:
Q  130 atttataagcaaaaaag-aactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  7277427 atttataagcaaaaaaacaactttttaggttcattgaataactaatgtatct 7277478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 33508522 - 33508588
Alignment:
Q  109 acatatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatg 175  Q
    ||||||||||| ||||  || |||||||||||||||| || |||||| || ||||||||||||||||    
T  33508522 acatatactcctttcagacacatttataagcaaaaaacaattttttaggtacattgaataactaatg 33508588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 33004177 - 33004230
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||||||||| |||||||||  |||||| ||||| ||||||||    
T  33004177 atcatatttataagcaaaaaacaactttttaaattcattaaataaataatgtat 33004230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 10304665 - 10304713
Alignment:
Q  127 catatttataagcaaaaaagaactttttatgttcattgaataactaatg 175  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||| ||||    
T  10304665 catatttataagcaaaaaataacttttcatgttcattaaataaccaatg 10304713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 32125471 - 32125419
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||||||||||   |||||||| |||||||||||| |||||||||    
T  32125471 tcatatttataagcaaaaatctactttttaggttcattgaatatctaatgtat 32125419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 20291784 - 20291843
Alignment:
Q  121 ttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||| ||| |||||||||||||||| ||||||||| ||  ||| ||||||||||||||||    
T  20291784 ttcagtcacatttataagcaaaaaacaactttttaagtatattaaataactaatgtatct 20291843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 22048822 - 22048876
Alignment:
Q  125 atcatatttataagcaaaa-aagaactttttatgttcattgaataactaatgtat 178  Q
    |||| |||||||||||||| || || |||||||||||||||||||| ||||||||    
T  22048822 atcacatttataagcaaaagaacaaatttttatgttcattgaataattaatgtat 22048876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 23673485 - 23673435
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||| ||||||||| ||  ||||||||| ||||||||||    
T  23673485 atttataagcaaaaaataactttttaggtatattgaataattaatgtatct 23673435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 10065195 - 10065146
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    ||||||||||||||||  |||||||| || |||||||||| |||||||||    
T  10065195 atttataagcaaaaaatgactttttaggtacattgaataattaatgtatc 10065146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 15725608 - 15725551
Alignment:
Q  126 tcatatttataagcaaaaaag-aactttttatgttcattgaataactaatgtatctag 182  Q
    ||||||||||||||||||||  ||||||||| ||  ||||||||||| ||||||||||    
T  15725608 tcatatttataagcaaaaaaacaactttttaggtatattgaataactcatgtatctag 15725551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 33508666 - 33508613
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||| |||||||||||||| | ||||| |||  |||||||||||||||||||||    
T  33508666 atcacatttataagcaaaacacaacttgttagattcattgaataactaatgtat 33508613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 38562120 - 38562185
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||||  ||| |||||||||||||||| ||||| |||  | |||||||||| ||||||||    
T  38562120 atactcccttcggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtat 38562185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 52840261 - 52840330
Alignment:
Q  112 tatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    |||||||||| |  ||| |||||||||||||||| || |||||| || |||| ||||| |||||||||||    
T  52840261 tatactccctccggtcacatttataagcaaaaaataattttttaagtacattaaataattaatgtatcta 52840330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 6371926 - 6371974
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||||  |||||||| || |||||||||| ||||||||    
T  6371926 atttataagcaaaaaatgactttttaggtacattgaataattaatgtat 6371974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 10065060 - 10065128
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||||| |  ||| |||||||||||||||| ||||||||| || |||  ||||| |||||||||||    
T  10065060 atactccctccggtcacatttataagcaaaaaacaactttttaggtacatccaataattaatgtatcta 10065128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 15604592 - 15604540
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||||  ||||||||| |||||| |||||||||||| ||| ||||||||    
T  15604592 tcatatttactagcaaaaaacaactttatatgttcattgattaattaatgtat 15604540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 23614504 - 23614456
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||||  |||||||| |||||||||| | |||||||||    
T  23614504 atttataagcaaaaaaccactttttaggttcattgaacacctaatgtat 23614456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 30920838 - 30920794
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaat 174  Q
    |||||||||||||||| || |||||| ||| ||||||||||||||    
T  30920838 atttataagcaaaaaataattttttaagtttattgaataactaat 30920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 33004303 - 33004251
Alignment:
Q  126 tcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||| |||||| ||| ||||| ||| |||||||| |||||||||    
T  33004303 tcatatttataagaaaaaaacaacattttaagtttattgaatatctaatgtat 33004251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 39993171 - 39993123
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||| |||||| |||||||||  |||||||||||| ||||||||    
T  39993171 atttataagtaaaaaataactttttagattcattgaataattaatgtat 39993123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 26601974 - 26602028
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatctagcc 184  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||    
T  26601974 atttataagcaaaaaacaactttttaggttcattgaataattaacgtatctagcc 26602028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 28732605 - 28732543
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatg 175  Q
    ||||||||||| |||| |||||||||||||| |||||||||||  |||||||||| |||||||    
T  28732605 atactcccttcgatcacatttataagcaaaatagaactttttagattcattgaatgactaatg 28732543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 21150136 - 21150204
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    |||||||||  | ||||||||||| |||||||| |||||||||  |||||| |||||||||||||||||    
T  21150136 atactccctctagtcatatttatatgcaaaaaataactttttagattcattaaataactaatgtatcta 21150204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 25109035 - 25108987
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||| |||||| || |||||||||||||||||||||||||||||    
T  25109035 atttataagtaaaaaataattttttatgttcattgaataactaatgtat 25108987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 16867629 - 16867674
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatg 175  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||    
T  16867629 atttataagcaaaaaacaactttttaggtacattgaataactaatg 16867674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 27786602 - 27786541
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaat 174  Q
    ||||||||| | |||| |||||||||||||| | ||||||||| |||||||||||| |||||    
T  27786602 atactccctccgatcacatttataagcaaaacacaactttttaggttcattgaatacctaat 27786541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 16867764 - 16867696
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||||||| |||| |||||||||||||||| ||||||||| || |||  ||||| | |||||||||    
T  16867764 atactcccttcgatcacatttataagcaaaaaacaactttttaggtacatccaataattgatgtatcta 16867696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 30122102 - 30122034
Alignment:
Q  112 tatactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||| ||| |||| |||||||||||||||| || |||||| ||  ||||||||| ||||||||||    
T  30122102 tatactccattcgatcacatttataagcaaaaaataattttttaggtatattgaataattaatgtatct 30122034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 55121185 - 55121233
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    |||||||| ||||||| || |||||| ||||||||||||||||||||||    
T  55121185 atttataaacaaaaaacaattttttaggttcattgaataactaatgtat 55121233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 26331229 - 26331279
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||||||||| || ||| || ||||||||||| ||||||||||||    
T  26331229 atttataagcaaaaaacaattttctaggttcattgaatgactaatgtatct 26331279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 26331345 - 26331299
Alignment:
Q  130 atttataagcaaaaaagaactttttatgttcattgaataactaatgt 176  Q
    |||||||||||||||| ||||||||| ||||||||||  ||||||||    
T  26331345 atttataagcaaaaaacaactttttaggttcattgaaagactaatgt 26331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 37914656 - 37914606
Alignment:
Q  131 tttataagcaaaaaagaactttttatgttcattgaataactaatgtatcta 181  Q
    ||||||||||||||| |  |||||| ||||||||||||| |||||||||||    
T  37914656 tttataagcaaaaaatatatttttaggttcattgaataattaatgtatcta 37914606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 50561064 - 50561117
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtat 178  Q
    ||||||||||||||||||||| || ||||||  |||||||| || |||||||||    
T  50561064 atcatatttataagcaaaaaataattttttagattcattgagtatctaatgtat 50561117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 50626816 - 50626768
Alignment:
Q  132 ttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    |||||||||| |||  ||||| || ||||||||||||||||||||||||    
T  50626816 ttataagcaacaaaccactttataggttcattgaataactaatgtatct 50626768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 320817 - 320750
Alignment:
Q  113 atactcccttcaatcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatct 180  Q
    ||||||||| |||||| |||||||||||||| | |||||||||  |||||| |||||||||| |||||    
T  320817 atactccctccaatcacatttataagcaaaacacaactttttagattcattaaataactaatatatct 320750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 5826 - 5880
Alignment:
Q  125 atcatatttataagcaaaaaagaactttttatgttcattgaataactaatgtatc 179  Q
    |||| ||||||||||||||||  |||||||| || ||||||||||||||||||||    
T  5826 atcacatttataagcaaaaaatgactttttaggtacattgaataactaatgtatc 5880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University