View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_high_23 (Length: 405)
Name: NF11977_high_23
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 151 - 394
Target Start/End: Original strand, 3816078 - 3816321
Alignment:
| Q |
151 |
ctagaaaagttgaagacattggtctgtataaaacgtgatatgtattaaaatatannnnnnnnnnnnagggaaatattaaaatattttcttctttcctttt |
250 |
Q |
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| T |
3816078 |
ctagaaaagttgaagacattggtctgtataaaacgtgatatgtattaaaatattttctttttttttagggaaatattaaaatatttccttctttcctttt |
3816177 |
T |
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| Q |
251 |
aaactagtatacatatatacacggacacttgttgaagcaattctcataggaacaaaacattatcacaatacttacattaaacaatcatgggtttcactgc |
350 |
Q |
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| T |
3816178 |
aaactagtatacatatatacacggacacttgttgaagcaattctcataggaacaaaacattatcacaatatttacattaagcaatcatgggtttcactgc |
3816277 |
T |
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| Q |
351 |
tcataaattctacaccatctttcttctcagtcttgcagttctct |
394 |
Q |
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| T |
3816278 |
tcgtaaattctacaccatctttcttctcagccttgcagttctct |
3816321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 3815950 - 3816011
Alignment:
| Q |
23 |
tgcattggaccgtaacatttagacaatgaccaacattcatatgttatttacccattcatata |
84 |
Q |
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| T |
3815950 |
tgcattggaccgtaacatttagacaaggaccaacattcatatgttatttacccattcatata |
3816011 |
T |
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