View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_high_26 (Length: 388)

Name: NF11977_high_26
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_high_26
NF11977_high_26
[»] chr4 (5 HSPs)
chr4 (3-209)||(53472289-53472496)
chr4 (209-371)||(53472096-53472258)
chr4 (208-363)||(9009991-9010146)
chr4 (208-325)||(29234732-29234849)
chr4 (37-126)||(29234936-29235030)
[»] chr6 (3 HSPs)
chr6 (253-358)||(22258704-22258809)
chr6 (208-335)||(16909706-16909833)
chr6 (25-93)||(16909953-16910022)
[»] chr5 (1 HSPs)
chr5 (221-358)||(20289716-20289853)
[»] chr3 (1 HSPs)
chr3 (212-261)||(30046656-30046705)
[»] chr1 (1 HSPs)
chr1 (58-90)||(7154999-7155031)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 9e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 53472496 - 53472289
Alignment:
Q  3 agtcagtacattgctggataccatcttgtgtcatttttcattctgcctttaactatattgttattattcttgcgtcttgttataacaaactggtatcaga 102  Q
    ||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  53472496 agtcagtacattgttggataccatcttgtgtcatttttcattttgtcttttactatatcgttattattcttgcgtcttgttataacaaattggtatcaga 53472397  T
Q  103 gctggtttgaatctgtgcaggcggaaacaatggttgg-ggtaaaagtttgaaaacaatggttggaggtaaaagtttgaaagtcgataagatcactgggag 201  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  53472396 gctggtttgaatttgttcaggcggaaacaatggttggaggtaaaagtttgaaaacaatggttggaggtaaaagtttgaaagtcgacaagttcactaggag 53472297  T
Q  202 gaataatt 209  Q
    ||||||||    
T  53472296 gaataatt 53472289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 209 - 371
Target Start/End: Complemental strand, 53472258 - 53472096
Alignment:
Q  209 tgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgtt 308  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||    
T  53472258 tgcttaaacagcaaggtctatgtacacctttgttaaagcctgcaccaaaccctctatctgctgatatcgccactctaaaggagaagacacattctacgtt 53472159  T
Q  309 gctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgctgccggtct 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53472158 gctccttgctttggaagatcatatcatcactaaggttgctgaagaagataccgctgccggtct 53472096  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 9010146 - 9009991
Alignment:
Q  208 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 307  Q
    ||||||||||| |||| |||||| |  ||||| ||||| | ||| ||||||||| ||  | |||||||||||||  | ||| ||||| ||||||||||||    
T  9010146 ttgcttaaacaacaagatctatggatgccttttttaaagcttgcgccaaaccctttacctactgatatcgccaccatggaggagaaggcacattctacgt 9010047  T
Q  308 tgctccttgctttggaagatcatatcatcactaaggttgctgaagaggataccgct 363  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  9010046 tgctccttgttttggaagatcatatcatcactgaggttgttgaagaggatatcgct 9009991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 325
Target Start/End: Complemental strand, 29234849 - 29234732
Alignment:
Q  208 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 307  Q
    |||||||||||||| |||||||  |||||||||||||| |||||| |||| ||| ||  ||||||||||| |||||| ||| | ||| |||| |||||||    
T  29234849 ttgcttaaacagcatggtctatagacacctttgttaaagcctgcatcaaatcctctacctgctgatatcgtcactctggaggaaaaggcacaatctacgt 29234750  T
Q  308 tgctccttgctttggaag 325  Q
    ||||||||||||||||||    
T  29234749 tgctccttgctttggaag 29234732  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 29235030 - 29234936
Alignment:
Q  37 ttttcattctgcctttaactatat-----tgttattattcttgcgtcttgttataacaaactggtatcagagctggtttgaatctgtgcaggcgg 126  Q
    |||||||||||||||| |||||||     ||| |||||||| |||||  ||||||||||||| ||| ||||||||||| | || ||| |||||||    
T  29235030 ttttcattctgccttttactatatattattgtcattattctcgcgtcgcgttataacaaactagtaccagagctggttcggatatgttcaggcgg 29234936  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 22258704 - 22258809
Alignment:
Q  253 ccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgctttggaagatcatatcatcactaaggttgctgaag 352  Q
    ||||||||| || ||||||||||||||||||| | | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22258704 ccaaaccctctacttgctgatatcgccactctggtggagaagacacattctgcgctgctccttgctttggaagatcatatcatcactaaggttgctgaag 22258803  T
Q  353 aggata 358  Q
    ||||||    
T  22258804 aggata 22258809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 16909833 - 16909706
Alignment:
Q  208 ttgcttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgt 307  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||| ||   |||||||| |  ||||| |   ||||| |||||||||||     
T  16909833 ttgcttaaacagcagggtctatggacacctttgttaaagcctgcgccaaaccctctaccagctgatattgaaactctggtagagaaggcacattctacga 16909734  T
Q  308 tgctccttgctttggaagatcatatcat 335  Q
    |||||||||||||||||||| |||||||    
T  16909733 tgctccttgctttggaagattatatcat 16909706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 16910022 - 16909953
Alignment:
Q  25 atcttgtgtcatttttcattctgcctttaactat-attgttattattcttgcgtcttgttataacaaact 93  Q
    |||||||||| ||||||||| || |||| ||||| ||||| |||||||| ||||| ||||||||||||||    
T  16910022 atcttgtgtcgtttttcattatgtcttttactattattgtcattattctcgcgtcctgttataacaaact 16909953  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 221 - 358
Target Start/End: Complemental strand, 20289853 - 20289716
Alignment:
Q  221 aaggtctatgtacacctttgttaaatcctgcaccaaaccctatatttgctgatatcgccactctagagtagaagacacattctacgttgctccttgcttt 320  Q
    |||||||||| ||||||||| |||| ||| | ||| ||||| ||  ||||||| |||||||||||||| ||||  ||||||||| |||||||| ||||||    
T  20289853 aaggtctatggacacctttgataaagcctacgccataccctctacctgctgatttcgccactctagaggagaaagcacattctatgttgctccatgcttt 20289754  T
Q  321 ggaagatcatatcatcactaaggttgctgaagaggata 358  Q
    ||| ||||||||||||||| |||| |||||||||||||    
T  20289753 ggatgatcatatcatcactgaggtcgctgaagaggata 20289716  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 30046656 - 30046705
Alignment:
Q  212 ttaaacagcaaggtctatgtacacctttgttaaatcctgcaccaaaccct 261  Q
    ||||||| || |||||||| | |||||||||||| |||||||||||||||    
T  30046656 ttaaacaacagggtctatggagacctttgttaaagcctgcaccaaaccct 30046705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 7155031 - 7154999
Alignment:
Q  58 tattgttattattcttgcgtcttgttataacaa 90  Q
    |||||| ||||||||||||||||||||||||||    
T  7155031 tattgtcattattcttgcgtcttgttataacaa 7154999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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