View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_high_37 (Length: 321)
Name: NF11977_high_37
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 5779307 - 5779011
Alignment:
| Q |
13 |
taggggcggtgacatcggaggtgatgggcacgggaagctctttcggcatcaacaccttggagacagcgtagacagcaactggagagcgatcatacaaagt |
112 |
Q |
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| T |
5779307 |
taggggcggtgacatcagaggtgatgagcgcgggaagctctttcggcatcaacaccttggagacagcgtagacagcgattggagagcgatcatacaaagt |
5779208 |
T |
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| Q |
113 |
ccgagtaacgagagctcggacaatgttgttgctgacggccacagagccgttaagcat---agtgatgtttatcctatatgtagcctggcccatgatttcg |
209 |
Q |
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| T |
5779207 |
ccgagtaacaagagctcggacaatgttgttgctgacggccacagagccgttaaccatcacagtgatgtttatcctatatgtagcctggcccatgatttcg |
5779108 |
T |
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| Q |
210 |
gttgccaccgtatcttgcaaatgcgtatcattggcaattttgcgaaggacagcaggaggcaaatattctttcaacatatgacatttgagaacgaaat |
306 |
Q |
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| T |
5779107 |
gttgccaccgtatcttgcaaatgcatatcattggcaattttgcgaaggacagcaggaggcaaatattctttcaacatatgacatttgagaacgaaat |
5779011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 47 - 306
Target Start/End: Complemental strand, 5817548 - 5817286
Alignment:
| Q |
47 |
aagctctttcggcatcaacaccttggagacagcgtagacagcaactggagagcgatcatacaaagtccgagtaacgagagctcggacaatgttgttgctg |
146 |
Q |
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| T |
5817548 |
aagctctttgggcatcaacaccttggagaaggcgtaaacaacaaccagagagcgatcatacaatgtccaagtaacgagagctcgaacaatgttgttgctg |
5817449 |
T |
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| Q |
147 |
acggccacagagccgttaagcat---agtgatgtttatcctatatgtagcctggcccatgatttcggttgccaccgtatcttgcaaatgcgtatcattgg |
243 |
Q |
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| T |
5817448 |
atggccacagagccgttaaccattgcagtgatgtttatcatatatttatcctgccccatgattttgactgccaccatgacttgcaaatgccaaacattga |
5817349 |
T |
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| Q |
244 |
caattttgcgaaggacagcaggaggcaaatattctttcaacatatgacatttgagaacgaaat |
306 |
Q |
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|||||| | ||| ||| || |||| ||||||||| |||| |||||||| | |||||| |||| |
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| T |
5817348 |
caatttggggaaagacggcgggagaaaaatattctctcaatatatgacactcgagaacaaaat |
5817286 |
T |
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