View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_high_48 (Length: 290)
Name: NF11977_high_48
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 39097751 - 39098014
Alignment:
| Q |
19 |
ttaacactactaagcctgccttgaaacaaccttggatttttcacccaactttcatagtttctcttcacagtatcatcacaatgtgaagctatcatcttac |
118 |
Q |
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| T |
39097751 |
ttaacactactaagcctgccttgaaacaaccttggatttttcacccaactttcatagtgtctcttcacagtatcatcacaatgtgaagctatcatcttat |
39097850 |
T |
|
| Q |
119 |
tcatctcaaaagcaacttttccaaacgctccttcagcaagtaatttctttgctttcattttcacacaaccaacctgcaatgcatttccgaagtaattctc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
39097851 |
tcatctcaaaagcaacttttccaaacgctccttcagcaagtaattcctttgctttcattttcacaccaccaacctgcaatgcatttccaaagtaattctc |
39097950 |
T |
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| Q |
219 |
gtgcaaaggtggaataactctgcctctaacatcaatgactaaacaatacatgatttcttcttct |
282 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39097951 |
gtgcaaaggtggaataattctgcctctaacatcaatgactaaacaatacatgatttcttcttct |
39098014 |
T |
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