View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11977_high_51 (Length: 266)

Name: NF11977_high_51
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11977_high_51
NF11977_high_51
[»] chr4 (10 HSPs)
chr4 (18-256)||(36399658-36399896)
chr4 (21-256)||(36435723-36435958)
chr4 (21-256)||(36407115-36407350)
chr4 (24-256)||(36429270-36429502)
chr4 (21-256)||(36376225-36376460)
chr4 (21-256)||(36419277-36419512)
chr4 (18-196)||(36370513-36370691)
chr4 (18-256)||(36389469-36389708)
chr4 (21-181)||(36412313-36412473)
chr4 (198-256)||(36370433-36370491)
[»] chr2 (1 HSPs)
chr2 (102-190)||(2662500-2662588)
[»] chr8 (6 HSPs)
chr8 (97-157)||(15697360-15697420)
chr8 (97-162)||(15692684-15692749)
chr8 (97-154)||(15799867-15799924)
chr8 (97-154)||(15805399-15805456)
chr8 (121-220)||(23560535-23560634)
chr8 (102-154)||(15813254-15813306)
[»] chr3 (1 HSPs)
chr3 (112-240)||(5488910-5489038)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 36399896 - 36399658
Alignment:
Q  18 gagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36399896 gagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaatctgagattttgggattcattt 36399797  T
Q  118 cagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36399796 cagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatgccacaaat 36399697  T
Q  218 aatttcgaaacgcttaacccaatccaatgatgacctttg 256  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  36399696 aatttcaaaacgcttaccccaatccaatgatgacctttg 36399658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 36435958 - 36435723
Alignment:
Q  21 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcag 120  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||    
T  36435958 acatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcag 36435859  T
Q  121 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435858 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 36435759  T
Q  221 ttcgaaacgcttaacccaatccaatgatgacctttg 256  Q
    ||| ||||||||| ||||||||||| ||||||||||    
T  36435758 ttcaaaacgcttaccccaatccaataatgacctttg 36435723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 36407350 - 36407115
Alignment:
Q  21 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||    
T  36407350 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcag 36407251  T
Q  121 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 220  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||    
T  36407250 cgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaacacctcgagcaatcccacaaatgat 36407151  T
Q  221 ttcgaaacgcttaacccaatccaatgatgacctttg 256  Q
    ||| |||||||| |||||||||||||||||||||||    
T  36407150 ttcaaaacgctttacccaatccaatgatgacctttg 36407115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 36429502 - 36429270
Alignment:
Q  24 tactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcagcat 123  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  36429502 tactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcagcat 36429403  T
Q  124 caaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataatttc 223  Q
    | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36429402 cgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataatttc 36429303  T
Q  224 gaaacgcttaacccaatccaatgatgacctttg 256  Q
     |||||||| |||||||||||||| ||||||||    
T  36429302 aaaacgctttacccaatccaatgacgacctttg 36429270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 36376460 - 36376225
Alignment:
Q  21 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcag 120  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||    
T  36376460 acatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcag 36376361  T
Q  121 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 220  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36376360 catcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatcccacaaataat 36376261  T
Q  221 ttcgaaacgcttaacccaatccaatgatgacctttg 256  Q
    ||| ||||||||  ||||||||||||||||||||||    
T  36376260 ttcaaaacgctttccccaatccaatgatgacctttg 36376225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 256
Target Start/End: Complemental strand, 36419512 - 36419277
Alignment:
Q  21 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcag 120  Q
    |||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||    
T  36419512 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccataccaaaatccgagattttgggattcattacag 36419413  T
Q  121 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 220  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  36419412 catcaaggagaacgttgctggcttttagatctctatggattattttcagccttgaatcttgatgaagatataatacacctcgagcaatcccacaaataat 36419313  T
Q  221 ttcgaaacgcttaacccaatccaatgatgacctttg 256  Q
    ||| |||||| |||||||||||||||||||||||||    
T  36419312 ttcaaaacgcgtaacccaatccaatgatgacctttg 36419277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 36370691 - 36370513
Alignment:
Q  18 gagacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  36370691 gagacatactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattt 36370592  T
Q  118 cagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaac 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36370591 cagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaac 36370513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 36389708 - 36389469
Alignment:
Q  18 gagacatactatgttccgaccactctttttgttcttgcttggatttcatcttc---tccaaatattctagccataccgaaagctgagattttgggattca 114  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||   ||||||||||||||||||||| ||| |||||||||| || ||||    
T  36389708 gagacatactatgttccaaccactctttttgttattgcttggatttcatcatcgtctccaaatattctagccataccaaaatctgagattttagggttca 36389609  T
Q  115 tttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccaca 214  Q
    || |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||     
T  36389608 ttgcagcgtcaaggagaacattgctggcttttaggtctctatgaatgattttcagccttgaatcttgatgaagatataaaacgcctcgagcaatcccac- 36389510  T
Q  215 aataatttcgaaacgcttaacccaatccaatgatgacctttg 256  Q
     |||||||| ||||| ||  ||||||||||||||||||||||    
T  36389509 -ataatttcaaaacgtttgccccaatccaatgatgacctttg 36389469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 36412473 - 36412313
Alignment:
Q  21 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaagctgagattttgggattcatttcag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||    
T  36412473 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcag 36412374  T
Q  121 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttg 181  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412373 cgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttg 36412313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 36370491 - 36370433
Alignment:
Q  198 cctcgagcaatgccacaaataatttcgaaacgcttaacccaatccaatgatgacctttg 256  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36370491 cctcgagcaatcacacaaataatttcaaaacgcttaacccaatccaatgatgacctttg 36370433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 2662500 - 2662588
Alignment:
Q  102 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagata 190  Q
    ||||| |||||||||||  |||| |  ||||||||||| |||||||||||||||||||||||| | || |||||||||  |||||||||    
T  2662500 atttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtcttgaatctctatgaagata 2662588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 15697360 - 15697420
Alignment:
Q  97 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatg 157  Q
    |||| ||||| |||||||||||| |||| || ||||||||||||||||| |||||||||||    
T  15697360 ctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatg 15697420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 15692684 - 15692749
Alignment:
Q  97 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctctatgaatta 162  Q
    |||| ||||||||||||||||||  ||| |  ||||||||||| ||||| ||||||||||||||||    
T  15692684 ctgatattttgggattcatttcatgatctaatagaacattgctagctttgagatctctatgaatta 15692749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 15799867 - 15799924
Alignment:
Q  97 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 154  Q
    |||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15799867 ctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctct 15799924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 15805399 - 15805456
Alignment:
Q  97 ctgagattttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 154  Q
    |||| ||||| |||||||||||| |||| || ||||||||||||||||| ||||||||    
T  15805399 ctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctct 15805456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 220
Target Start/End: Original strand, 23560535 - 23560634
Alignment:
Q  121 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgccacaaataat 220  Q
    ||||||| | || |||||| | ||| || ||||||||||||||  |||| || ||||||||||||||||| | || |||||| ||||| || ||||||||    
T  23560535 catcaagcaaaatattgcttggtttgaggtctctatgaattatcctcagtctagaatcttgatgaagataaagaagacctcgggcaattccgcaaataat 23560634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 15813254 - 15813306
Alignment:
Q  102 attttgggattcatttcagcatcaaggagaacattgctggcttttagatctct 154  Q
    ||||| |||||||||||| |||| || ||||||||||| ||||| ||||||||    
T  15813254 atttttggattcatttcatcatccagaagaacattgctcgctttcagatctct 15813306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 5488910 - 5489038
Alignment:
Q  112 tcatttcagcatcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaacacctcgagcaatgcc 211  Q
    |||| ||| ||||||| |||| |||||| | ||| | ||||||||| || ||| | ||  | ||||||||||||||||| || |  ||||||||||| ||    
T  5488910 tcatatcaacatcaagaagaatattgcttgttttcatatctctatgtatgattcttagtgtagaatcttgatgaagatacaacagccctcgagcaattcc 5489009  T
Q  212 acaaataatttcgaaacgcttaacccaat 240  Q
    |  ||||||||| | |||||||| |||||    
T  5489010 atcaataatttccagacgcttaatccaat 5489038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University