View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11977_low_11 (Length: 597)
Name: NF11977_low_11
Description: NF11977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11977_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 85 - 588
Target Start/End: Complemental strand, 26542961 - 26542459
Alignment:
| Q |
85 |
gatcaaaatacataacttcaaattcagttttatctaagtttcatttccattgcctgtttttcagtcgtgcatcggattacggattagtcaaggtagatgg |
184 |
Q |
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| T |
26542961 |
gatcaaaatacataacttcaaattcagttttatctaagtttcatttccattgcctgtttttcagtcgtgcatcggattacggattagtcaaggtagatag |
26542862 |
T |
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| Q |
185 |
cggaggtcgcatcatccaattttcggaaaaacctaagggagctgatcttaaatcaatggtaagtccaatacatttatgaaagttcaaataaaatagttca |
284 |
Q |
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| T |
26542861 |
cggaggtcgcatcatccaattttcggaaaaacctaagggagctgatcttaaatcaatggtaagtccaatacatttatgaaagttcaaataaaatagttca |
26542762 |
T |
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| Q |
285 |
gtctcttcccttttgggaacatgttcgcgtaggagtaacaaaatacaccgtttctgtcacgtaatgaagataacgaacacttctgcnnnnnnnaacgaaa |
384 |
Q |
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| T |
26542761 |
gtctcttcccttttgggaacatgttcgcgtaggagtaacaaaatacaccgtttctgtcacgtaatgaagataacgaacacttctgctttttttaacgaaa |
26542662 |
T |
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| Q |
385 |
tgtatttgaaagggtaacggcgcaaacgttttaagacttaaggactaacctgttacaaaaataacaacnnnnnnnngacttaagagggttaatatggtac |
484 |
Q |
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| T |
26542661 |
tgtatttgaaagggtaacggcgcaaacgttttaagacttaaggactaacctgttacaaaaataacaacaaaaaaaagactt-agagggttaatatggtac |
26542563 |
T |
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| Q |
485 |
attgagataactcaaaggactgcataatgtattttgcctaatttgatcataatatatttatcttttttggcttctatagtcatgtgtttctgatgcttct |
584 |
Q |
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| T |
26542562 |
attgagataactcaaaggaccgcataatgtattttgcctaatttgatcataatatatttatcttttttggcttctatagtcatgtgtttctgatgcttct |
26542463 |
T |
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| Q |
585 |
ctgc |
588 |
Q |
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|||| |
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| T |
26542462 |
ctgc |
26542459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 26543027 - 26542986
Alignment:
| Q |
19 |
ggtgacaggtattttatgttcagtcacctttaaaaaatttcc |
60 |
Q |
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| T |
26543027 |
ggtgacaggtattttatgttcagtcacctttaataaatttcc |
26542986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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